Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0609 ATGGAGGGGGAAAACGCGAGCAAGGTGATTGAGTTGGTGAACGAGATAGCGAGTATCTCCGATTACAGGCCTCCGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGTTGAAGCTGTTGATCCCGATGTTCGAGGAGATTAGGGACATGAAAGACCAGATCCCCGAGGACACTTCCAAAGCCGTCCTCGCCTTCAAGGAAGCTCTCGAATCCGCTAGGGAACTTCTCAGATTTGGAAGCGAAGGCAGCAAGCTTTACTTGGTCCTTGAGCGGGATGGCATTATGAATAAATTCTACGACGTGACAGCTCGGTTGGAACAATCGTTGGGTGGTATTTCGTATGATAAACTTGATATCTCAGATGAAGTTAAAGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGACGAACCAGATGTTAGGTTGTATGAGGATATGTTGTTCCTCTACGACAACAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCGATTGGCTGAAAAATTGCAACTGATGGGAATAGCTGATCTTACGCAAGAATCGCTAGCTTTGCATGAGATGGTGGTATCAAGTGGTGGGGATCCTGGGGCACGCATCGAGAAAATAGCAATGTTACTGAAGAAGATAAAGGATTACGTGCAAACAGAAAATCTAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTGCAAAAGTCTATGGAGTGAGTACAAATGAAAAGAGTCATCAGGCCCCTGTTATTCCTGATGATTTTCGATGTCCCATTTCCCTGGAATTAATGAAGGATCCTGTGATTGTTTCAACCGGACAGACTTACGAGCGTTCTTGTATTGAGAAATGGTTGCAAGCAGGGCATGGGACATGCCCCAAAACACAGCAGACTCTCACTAGCACGGTTCTCACACCCAACTATGTCTTACGAAGTCTCATAGCACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCAGCAGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCAGCTGAGCGAAGTAAGATCGACGGTCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGTGAAATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTGTTGTCCGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCGCTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATCGTCTCTTCAGGGGCAGTTCCAGGTATAGTTCACGTGCTGAAGAAGGGAAGCATGGAAGCGCGGGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACAATTGGATCTTCAGGAGCCATACCACCACTAGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCGACAGCACTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGGAAGGCAGTGCGGGCTGGCGTTATTCCCACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTAGATGAAGCATTAGCTATTTTGGCGATACTGGCTAGCCATCCTGATGGGAAGGCTACGATTAGAGCTTCAGAGGCAGTGCCAGTTTTAGTAGAGTTCATTGGGAATGGTTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCATCTCTGTTCTGGAGATCAACAATATCTGGCACAGGCCCAAGAGCTGGGGGTGATGGGTCCATTGTTGGAGTTGGCTCAAAATGGTACAGATAGAGGCAAAAGAAAGGCTTTACAGTTACTAGAGCGTATGGGAAGGTTACTGGAGCAGCAGCAGGAAGTTCCAACACAAACTGAAACTCAAGCTCAGAACGAGGAAATCCAACCTCCTTTGATTACTAACCCCGATGATTCCTAA 1986 0.4718 MEGENASKVIELVNEIASISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMKDQIPEDTSKAVLAFKEALESARELLRFGSEGSKLYLVLERDGIMNKFYDVTARLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVRLYEDMLFLYDNSSDAATDPSVLSRLAEKLQLMGIADLTQESLALHEMVVSSGGDPGARIEKIAMLLKKIKDYVQTENLVKDDNLGGKGIFAKVYGVSTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSSQPSKSASAYSPAERSKIDGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPDGKATIRASEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKALQLLERMGRLLEQQQEVPTQTETQAQNEEIQPPLITNPDDS* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0609 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Vra2g0609 661 MobiDBLite consensus disorder prediction 635 661 - -
Vra2g0609 661 Gene3D - 340 651 IPR011989 -
Vra2g0609 661 Gene3D - 4 114 IPR036537 GO:0007166
Vra2g0609 661 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vra2g0609 661 MobiDBLite consensus disorder prediction 328 350 - -
Vra2g0609 661 SUPERFAMILY RING/U-box 244 331 - -
Vra2g0609 661 PANTHER U BOX DOMAIN-CONTAINING 4 644 - -
Vra2g0609 661 CDD RING-Ubox_PUB 259 301 IPR045210 -
Vra2g0609 661 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vra2g0609 661 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Vra2g0609 661 SMART arm_5 465 505 IPR000225 GO:0005515
Vra2g0609 661 SMART arm_5 424 464 IPR000225 GO:0005515
Vra2g0609 661 SMART arm_5 589 629 IPR000225 GO:0005515
Vra2g0609 661 SMART arm_5 383 423 IPR000225 GO:0005515
Vra2g0609 661 SMART arm_5 547 587 IPR000225 GO:0005515
Vra2g0609 661 SMART arm_5 506 546 IPR000225 GO:0005515
Vra2g0609 661 SUPERFAMILY ARM repeat 354 627 IPR016024 -
Vra2g0609 661 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 644 - -
Vra2g0609 661 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Vra2g0609 661 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Vra2g0609 661 Pfam Neurochondrin 518 640 IPR008709 -
Vra2g0609 661 MobiDBLite consensus disorder prediction 330 347 - -
Vra2g0609 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Vra2g0609 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0609 Vra-Chr2 4806254 4811181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0609 1 661 U-box Gene Family AT3G46510 69.520 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0609 - - pvu:PHAVU_011G064700g 1185.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0609 2 4806254 4811181 Vra2g0609 2 4806254 4811181 ECH