Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0606 ATGGCCATGGATGAGTATGAATGTGATGAGAAGGTCCACGTGGCAGTTGGGAAGTCCCTTAAGAAAGGCACCACTTTGATTCAATGGTGTTTCACCCATTTCAGCAAAGCACAGATATGCTTACTTCATGTTTACCAACCTTCTCCTATGATCCCTACACTGTTAGGAAAATTGCCAGCATCCCAAGCTAGTCCTGAAGTTGTGTCTGCTTATAGAATAGAGGAAAGAGAAGAGACCAAGAGGCTTCTAGAGAAGTATTTGAGCCTTTGCCGTGCAGCTAAGGTTAAGGTAAGTAGTGTCATTGGTGAAGCTGATCAAGTTCAGACAGGGATTGTGGATTTGGTTACTGTGCATAATATCAGGAAGCTTGTTATTGGAGCAATAACCCCAGAAAATTGCATGAAAATCAAAAGGAATTCCAGTAAAGCAAACTTTGCTGCGAAAAATGCTCCTCCANTCTGTGAAATATGGTTTGTCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCATTGTTTTGTATCTTCCCATCCTCAACCTGAGACTACAACGNCAGAGAGTTTGAGTTGTAGATCTCTTCAATATGGTACAACTGAATTGCTCCATTCAGAATGTCTTCAATCAAACTCTGTAAGGGCTACAAGAAGTACAGTTCCGAATATAATCATTGAAGCAGAAGCCACTTTTTCATCCAAATCATCCAGTTGTAGTAGTCATTGTTCTCCCCAACATTCAGAGTTTGATGAAGAAACAATAGATAGTCAACTTATTGAAGCCAAAGCAGAAGCTAATGCTGCAAAAGATGTGGAGCTGTTGGAGTGCAGAAGGCTGGAATTCATAGCCATTGAGGCCATTAGTAAGGTGAACTTATTTGAATCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGTTGAGGATGCAGTGAGAGCTACAATAAAGGAGCAACGGATGTTGTTGGAGGAGAAAGAAAAAATTGCTAGTGAACTGGAAAGGACCACGGGAAGTATTTCCTTTCTAGGAAATTGTGCACATGAAATCAACAGTAAGCGTGATGAAGCTGCAAATGAACTATCACTGATTCAAGCATCGTTCTCAAGCCTGCAGCATGAGAAGCAGGAAATCAGGCGACAGAAAATGGAGGCTCTACATTGGCTTGAACGGTGGAAAAGTTGTGGACATGTTGGAGCAGATCATTGCGATGGGATCATTGGGTTTTCTGAAGAATTTCCAGAGCTGGCAGAATTTTCATTATCAGATCTTCAAAACGCTACGTGCAATTTTTCTGAGAGCTTCAAAGCCATGGAGGGTGGATATGGTTCTATTTATAAGGGAGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATTCACACAACATGCAAGGATCGATAGAGTTTCAGCAAGAGGTTCGAATTCTTGGTAGTCTCCAACACCCTAATCTAGTTACTTTGCTTGGTGTATGCCCTGAAGCCTGGTCATTTGTGTATGAGTTCTATCCCAATGGAACTCTTCAAGATTACCTATTCCGAAAGGGAAGTCTTCTCCCTATGACATGGAGTATCCGAGCACGATGTATTTTTGAAATTGCTAGAGCTCTCTGCTTCCTACATTCTTCCAGACCTGAAACTATTGTCCATGGTGGTCTGACACTTGAAACTGTCCTTCTTGACACTGCACTTGGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTAGTGAAAGAGGAGTCACTATCTCTTCCTAGTTTTCACTTGATCACCGAGCCAAAGGGTTCTTTTTCATATACAGATCCCGAGCTTCAGAGAACTGGAGTACTAACACCTAAGTCTGACGTATACTCCTTTGGACTCATCATTCTGCAACTTCTCACTGGTAGGACTCCGGTTGGATTAGCTGGTGAAGTACGCAGAGCAGTTTCATGCGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGAATTCCACCATGGTAACACAATTGGCTGAACTTGGATTGCAATGCTGCCAACTGAACAGCAGAGACCGACCAGAGTTAACACCTTCTCTAGTGAGGGAGTTGAAGCAGTTGTATGTTTCAGAAGAGCGACCAGTGCCATCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACCTATGAAAGGAAGGCCATAAGTGAATGGCTGGATAATGGGCACGAAACTTCACCTATGACTAATTTAAAGTTGAGTTACCTCCATCTCACTCCCAATCATGCGCTTCGACTTGCTATTCAAGGCTGGCTTTGCAAATCTTGA 2328 0.4223 MAMDEYECDEKVHVAVGKSLKKGTTLIQWCFTHFSKAQICLLHVYQPSPMIPTLLGKLPASQASPEVVSAYRIEEREETKRLLEKYLSLCRAAKVKVSSVIGEADQVQTGIVDLVTVHNIRKLVIGAITPENCMKIKRNSSKANFAAKNAPPXCEIWFVYKGKHIWTREASETHCFVSSHPQPETTTXESLSCRSLQYGTTELLHSECLQSNSVRATRSTVPNIIIEAEATFSSKSSSCSSHCSPQHSEFDEETIDSQLIEAKAEANAAKDVELLECRRLEFIAIEAISKVNLFESAHAHEVKLRKEVEDAVRATIKEQRMLLEEKEKIASELERTTGSISFLGNCAHEINSKRDEAANELSLIQASFSSLQHEKQEIRRQKMEALHWLERWKSCGHVGADHCDGIIGFSEEFPELAEFSLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSIEFQQEVRILGSLQHPNLVTLLGVCPEAWSFVYEFYPNGTLQDYLFRKGSLLPMTWSIRARCIFEIARALCFLHSSRPETIVHGGLTLETVLLDTALGCKICEFGFSRLVKEESLSLPSFHLITEPKGSFSYTDPELQRTGVLTPKSDVYSFGLIILQLLTGRTPVGLAGEVRRAVSCGKLSSILDSSAGEWNSTMVTQLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEERPVPSFFLCPIFQEIMHDPQVAADGFTYERKAISEWLDNGHETSPMTNLKLSYLHLTPNHALRLAIQGWLCKS* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0606 775 CDD RING-Ubox_WDSUB1_like 709 750 - -
Vra2g0606 775 Gene3D HUPs 7 127 IPR014729 -
Vra2g0606 775 Pfam Protein tyrosine and serine/threonine kinase 439 687 IPR001245 GO:0004672|GO:0006468
Vra2g0606 775 PANTHER OS02G0152300 PROTEIN 8 774 - -
Vra2g0606 775 ProSiteProfiles Protein kinase domain profile. 431 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0606 775 Gene3D Transferase(Phosphotransferase) domain 1 504 704 - -
Vra2g0606 775 SMART Ubox_2 708 771 IPR003613 GO:0004842|GO:0016567
Vra2g0606 775 ProSiteProfiles U-box domain profile. 704 775 IPR003613 GO:0004842|GO:0016567
Vra2g0606 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 775 IPR013083 -
Vra2g0606 775 PANTHER OS10G0100500 PROTEIN 8 774 - -
Vra2g0606 775 SUPERFAMILY RING/U-box 702 774 - -
Vra2g0606 775 SUPERFAMILY Protein kinase-like (PK-like) 414 688 IPR011009 -
Vra2g0606 775 CDD STK_N 11 162 - -
Vra2g0606 775 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 32 127 - -
Vra2g0606 775 Pfam U-box domain 705 774 IPR003613 GO:0004842|GO:0016567
Vra2g0606 775 Coils Coil 316 336 - -
Vra2g0606 775 Gene3D Phosphorylase Kinase; domain 1 408 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0606 Vra-Chr2 4769366 4774225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0606 9 772 U-box Gene Family AT2G45910 35.309 1.23e-155 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra2g0606 PK_Tyr_Ser-Thr 9.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0606 - - gmx:100799032 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0606 2 4769366 4774225 Vra2g0606 2 4769366 4774225 ECH
Vra4g0239 4 5068299 5072560 Vra2g0606 2 4769366 4774225 PCT