Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0602 ATGGGAGTTTGTTTGAGCACCAAAACTAAAACTGGGTTAAACTCAAAGAATGTGAGTGCCGATGTCAAAGATCTCAGCAGTCCAAGTAGTAAAATTATAAAAGAACTCAGTAGCACAATTAGTAAGATCTCAGAGGTTTCGATGCCTCAGACTCTTCAAAGTGAGGGTGAGATCTGGCATCCATCCAATCTGAAGAGCTTTAGTTTGACAGAACTTACAGCTGCCACAAGAAATTTCCGTAAGGACAGTGTGTTAGGAGAGGGTGGTTTGGGATCAGTTTTTAAGGGTTGGATTGATGATCACTCACTTTCTGCAACCAAACCTGGCACTGGGATTGTTGTTGCTGTGAAAAGACTTAGCCAGGACACTTTCCAAGGTCACGAGGAGTGGTTGGCAAGGCACGGTATCACTCAGGAAGAAAGTCTCAAGGATGAAGTAAACTGTCTAGGCCAGCTTTCTCATCCCCATCTTGTGAAATTAATTGGATATTGCTTTGAAGATAGAGACCGTCTTCTGGTATATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGCTCATATTTTCAACCTCTTTCTTGGGGCCTGCGTTTGAAAGTCGCTCTTGGTGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATATAAAGATTTCAAGACCTCAAATGTCTTGCTGGATTCACATTACAATGCAAAGCTTGCTGATTTGGGGCTCTCAATGGAAGCACCTACACGTGACAAAAGTCGTGTCTCCACTAGAGTAATGGGAACCTATGGATATGCAGCTCCAGAATATCTAGCCACAGGTAATGTTAGTGCTAAGAGTGATGTCTTCAGTTTTGGAGTTGTTCTGCTAGAACTGTTATCTGGTAGGAGGACTGTGGACAAGAACAGACCATCAGGGCAGCACAATTTGGTGGAATGGGCAAAGCCATACATGGCAAACAAGAGAAAGCTTCTGCGTGTGTTGGATAACCGTCTTGAAGGCCAATATGACATAGATGAAGCTTTTAAGGTAGCTACTCTCTGTCTGCGATGCCTTGCAACAGAATCCAAGTTGAGACCAAACATGCACGAAGTTGTCACAGATTTGGAGCACCTGCAGGTTCCTCATGTGCATCATAATCGTTCTGTGAATACCTCTCGTGGTCGTAGGAAAAGTGCTGATGATTTAACTAAAGGTAGAAGCATTAAAGCGTCACTTTCGCCTCTCTCACATGACATTGCAAATACACGTCCTTGA 1269 0.435 MGVCLSTKTKTGLNSKNVSADVKDLSSPSSKIIKELSSTISKISEVSMPQTLQSEGEIWHPSNLKSFSLTELTAATRNFRKDSVLGEGGLGSVFKGWIDDHSLSATKPGTGIVVAVKRLSQDTFQGHEEWLARHGITQEESLKDEVNCLGQLSHPHLVKLIGYCFEDRDRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYKDFKTSNVLLDSHYNAKLADLGLSMEAPTRDKSRVSTRVMGTYGYAAPEYLATGNVSAKSDVFSFGVVLLELLSGRRTVDKNRPSGQHNLVEWAKPYMANKRKLLRVLDNRLEGQYDIDEAFKVATLCLRCLATESKLRPNMHEVVTDLEHLQVPHVHHNRSVNTSRGRRKSADDLTKGRSIKASLSPLSHDIANTRP* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0602 422 MobiDBLite consensus disorder prediction 380 405 - -
Vra2g0602 422 SUPERFAMILY Protein kinase-like (PK-like) 63 375 IPR011009 -
Vra2g0602 422 Pfam Protein tyrosine and serine/threonine kinase 82 373 IPR001245 GO:0004672|GO:0006468
Vra2g0602 422 Gene3D Transferase(Phosphotransferase) domain 1 177 397 - -
Vra2g0602 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vra2g0602 422 ProSiteProfiles Protein kinase domain profile. 79 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0602 422 Gene3D Phosphorylase Kinase; domain 1 47 176 - -
Vra2g0602 422 PANTHER OS01G0588500 PROTEIN-RELATED 32 392 - -
Vra2g0602 422 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 32 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0602 Vra-Chr2 4732567 4735444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0602 65 380 Glycoside Hydrolase AT3G07070 45.427 1.57e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra2g0602 PK_Tyr_Ser-Thr 5.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0602 - - gmx:100809679 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0602 2 4732567 4735444 Vra2g0602 2 4732567 4735444 ECH
Vra4g0233 4 5020541 5023711 Vra2g0602 2 4732567 4735444 PCT