Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0601 ATGAAGTGCTTCTACTTCTCCAACGCAGAGGACGAAGATTGCGTGGCAGCGGCACCGAGTTCGCGCGGTTCCACTTCGCGTGTGTCGTGGGCGCGTTCGCTCAGTCTCATGGACACGCGCAGCCGCTCCAACTTCGATTCCGACTCCACGGAATTCTCCGATACGGTGGACTTCCATCACTACCTGGTGCAGCGCCGCGCCAACGACCTCCGCCTCTTCCCATTCTCGGCGCTGAAGTGCGCCACGCGCGGGTTCAACCGCGCCCTCCTAGTTGGCGAGGGGGGGTTTGGGTCCGTGTACCGCGGCGTGGTGGATGAAGAGGAGGTGGCGATCAAGCAGCTGAACCGCAACGGGCAGCAGGGGCACAAGGAGTGGATCAACGAGGTGAATTTGTTGGGAGTGGTGAAGCATCCTAATCTGGTGAGGTTGGTAGGGTACTGCGCTGAGGACGATGAAAGAGGGATCCAGAGGCTTCTGGTTTACGAGTTTATGCCGAATAAGAGCTTGGAGGAGCATCTCTTGGCACGAGTCCCTTCCACGGTTCTGCCTTGGGGGACCAGGTTGAGAATTGCGCAAGATGCGGCTCGCGGTTTGGCTTATCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGGGATTTTAAGACGTCCAACATCCTGCTGGATGAAAACTTCAATGCAAAGCTTTCTGATTTTGGACTGGCTAGGCAAGGACCTTCAGAAGGGTCCGGCTATGTTTCCACAGCAGTTGTTGGCACCATAGGTTATGCTGCACCAGAGTATGTTCAGACTGGTAAGCTAACCGCTAAGAGTGATGTGTGGAGCTTTGGTGTAGTTCTTTACGAGCTTATCACTGGGAGGAGAGCTGTAGAGAGAAACCTACCTAAAAATGAACAGAAGCTTTTAGAGTGGGTTAGATCTTATGTTTCTGATCCTAGGAAGTTCCATCATATTGTAGACCCTCGACTTAAGGGGCAATACTGCATCAAATCAGCCCATAAACTTGCAATCCTGGCAAACAAATGCCTCACAAAACAGCCGAAGTCTCGCCCAAAAATGAGTGAGGTGGTTGAGTCTCTTGGAATCATTATTATTGAGACAGATACTCGGGATGAAGGCTTTCCCCAAGCTGCTGTAACCGCTAGAGAAGAAAAAGAAGAGAAGGTATCTATAGAGGAGACTGAACCTGAACCAGCGAAACAAGGGAACAATTACCTGAAGAAGGTTTTTGAATTGAAAGACATGGTCAGCTTAAGAAACAAGTCTATTGGAAGGTTGGATTGGAAAAGTTGGGCGCCTGGGCTAGTAAGAAGCTGGTGA 1320 0.5061 MKCFYFSNAEDEDCVAAAPSSRGSTSRVSWARSLSLMDTRSRSNFDSDSTEFSDTVDFHHYLVQRRANDLRLFPFSALKCATRGFNRALLVGEGGFGSVYRGVVDEEEVAIKQLNRNGQQGHKEWINEVNLLGVVKHPNLVRLVGYCAEDDERGIQRLLVYEFMPNKSLEEHLLARVPSTVLPWGTRLRIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDENFNAKLSDFGLARQGPSEGSGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPKNEQKLLEWVRSYVSDPRKFHHIVDPRLKGQYCIKSAHKLAILANKCLTKQPKSRPKMSEVVESLGIIIIETDTRDEGFPQAAVTAREEKEEKVSIEETEPEPAKQGNNYLKKVFELKDMVSLRNKSIGRLDWKSWAPGLVRSW* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0601 439 ProSitePatterns Protein kinases ATP-binding region signature. 91 112 IPR017441 GO:0005524
Vra2g0601 439 Gene3D Phosphorylase Kinase; domain 1 63 163 - -
Vra2g0601 439 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 34 392 - -
Vra2g0601 439 ProSiteProfiles Protein kinase domain profile. 85 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0601 439 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Vra2g0601 439 CDD STKc_IRAK 91 363 - -
Vra2g0601 439 Pfam Protein kinase domain 90 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0601 439 Gene3D Transferase(Phosphotransferase) domain 1 164 381 - -
Vra2g0601 439 PANTHER OS01G0588500 PROTEIN-RELATED 34 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0601 Vra-Chr2 4725938 4728509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0601 73 368 Glycoside Hydrolase AT3G07070 49.833 1.91e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra2g0601 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0601 - - gmx:100305425 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0601 2 4725938 4728509 Vra2g0601 2 4725938 4728509 ECH