Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0599 ATGGCAGTGCCAAGCATTTTGCTCTGCATTGTGCTTATCATCTCCTTAACATGGATGGTTGAAGCACGCATTCCGGGGATTTACGCCGGCGGTGCATGGGAAAGTGCTCACGCAACCTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGTGGAGCGTGTGGGTACGGGAATCTGTACAGCCAAGGCTACGGTGTGAACACGGCGGCATTAAGCACGGCGCTTTTCAACAATGGCCTCAGCTGCGGCGCGTGCTTTGAGATAAAGTGCGCTAACGACAGACAGTGGTGTCACTCGGGAAGTCCTTCCATCTTCATCACGGCAACAAACTTTTGCCCTCCCAACTACGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGTCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATTGCTGAATACCGTGCCGGAATTGTCCCCGTTGCCTTTCGCCGAGTGCCATGTAGAAAGCACGGAGGGATAAGGTTCACCGTCAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTGGCAGGTGCGGGGGATATCGTGCGCACTTACGTGAAGGGGTCCCGAACCGGGTGGATGCCAATGAGCCGAAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGGCAGACGCTGTCGTTTCGCGTGACGGGCAGCGACCGGCGCACCTCAACCTCGTGGAACATCGCTCCAGCCAATTGGCAATTCGGTCAAACTTTCATCGGAAAAAACTTCCGAGTCTGA 780 0.5538 MAVPSILLCIVLIISLTWMVEARIPGIYAGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKHGGIRFTVNGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQTLSFRVTGSDRRTSTSWNIAPANWQFGQTFIGKNFRV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0599 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Vra2g0599 259 Gene3D - 22 161 IPR036908 -
Vra2g0599 259 PANTHER EXPANSIN-A15 6 258 IPR002963 GO:0009664
Vra2g0599 259 SUPERFAMILY Barwin-like endoglucanases 11 183 IPR036908 -
Vra2g0599 259 PANTHER EXPANSIN 6 258 - -
Vra2g0599 259 SMART dpbb_1 68 155 IPR007112 -
Vra2g0599 259 Pfam Lytic transglycolase 68 154 IPR009009 -
Vra2g0599 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Vra2g0599 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Vra2g0599 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Vra2g0599 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Vra2g0599 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Vra2g0599 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Vra2g0599 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Vra2g0599 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Vra2g0599 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Vra2g0599 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Vra2g0599 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Vra2g0599 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Vra2g0599 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Vra2g0599 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Vra2g0599 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Vra2g0599 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Vra2g0599 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Vra2g0599 259 Gene3D - 165 257 IPR036749 -
Vra2g0599 259 SUPERFAMILY PHL pollen allergen 162 253 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0599 Vra-Chr2 4713931 4715489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0599 5 259 Expansin Gene Family AT2G39700 83.529 7.37e-163 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0599 - - gmx:100809139 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0599 2 4713931 4715489 Vra2g0599 2 4713931 4715489 ECH
Vra2g0599 2 4713931 4715489 Vra6g0683 6 6485547 6487582 ECH
Vra4g0230 4 4998691 5000178 Vra2g0599 2 4713931 4715489 ECH
Vra4g0230 4 4998691 5000178 Vra2g0599 2 4713931 4715489 PCT