Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0592 ATGGATCCACGTTTCGAGTTCAATTTCATCAACGGTTTTAAACCTAACCAAGTGCCCGACACGGTGGTTGTAGAGGATCAGTTCCTTGTCCCTGTTAATGGGATGATGAGACCCTTTGAGTTTGGATTCAGGGATAACTCGTTAGTTCTTCCACCTGATCCAAACGTTGCACAGAACCATGTTTCATTTGCCACCGACGAGGAGTCTCCACTGGACGAGATTGATTTTTCTGCTACTGTCTTACGCTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCGAAGTCGTGTATGTTTCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCATTCTATGAGGCCATTGGTGAGACACACCCTTCTTCAATAAAAACCTATCACAACGTGGACAGCCCTGAGGACAGTGGTTTCAGTGATTATGGCAGCAGTGGTACAGCCACTAGCAATGGTAACTCGATTGAGTCCCATTGGGGTAACTTTGATCTTACTGACTATAAGCCTTCCATACTGCAAACCACTTTTCCCACTGACTTTGTTTTCCAGGCCAGTTCGATCCAATCTTCTATGAACACCACAAACAACTTCAGTGTTACCGATAGTGGATTCTTGCATAGTTCCACTGCGGCTGGATGTTTGGATCCAACCTTGTTTAGCAAGAGTGAATCTGTTCTGCAATTTGAGAGGGGTGTGGAGGAAGCCAATAAGTTCCTACCTAAAGTGAATCCTTTGGTTGTTGACTTGGAGAACCCCTCTTTGAGGAAGGTTCCACCTATCCAAGAGGAAATTAAGGCAGAGAGAGATGAAATTTTTGCTGAGTTCAGAGGAAGGAAGAATCACGGGCGGGAAGATGAAGAATCAGATTCGCAAGATGGGAGAAGCAACAAGCAGTCTGCTGTGTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTTCTGCTTGGCAATGGATGCAGAAAGGAGCCAGCTCCTTTGTGTATTTGTTTCGCAGACCTTCCTAATGGAGCATCCTCGAGTTCACAGAAAAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAGCAAGGCAACACAAAAGGAGTTGTGGATCTGAGGACATTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGTGTCTGCTAATGAATTGCTGAAGCAGATAAGGCAACATACTTCTCCGCTGGGTGAGGGGACTCAGAGGCTGGCCCATTGCTTTGCAAATGCTCTTGAAGCACGCTTGGCTGGGACAGGCACTCAGATTTATACTGCTTTATCATACAAAAGAACCTCTGCAGCAGACATGGTGAAAGCTTACCAAATGTATATTTCGGCTTGTCCATTCAAGAAGCTATCAATCATTTTTGCAAACCATACAATTTTGCAGCTAGCCATGGAAGTTGAATCTCTTCACATTATAGACTTTGGCATCCGTTATGGCTTCCAGTGGCCAGCTCTTATTTATCGTCTATCAAAACGAGTTGGTGGGCCTCCCAAGCTGCGGATAACAGGGATAGAACTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGCAGACGGGACTTCGCCTTGCAAGATACTGTGATCGCTTTAAAGTTCCATTCGAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAGAGTTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATTCTATGTTTAGATTTCAGAATCTACTTGATGAGACAGTTGTGTTAAATAGTCCCCGGGATGCTGTTTTAAGTTTAATAAGGAAGGCAAATCCCACTATCTTTATACACGGTACTGTCAATGGGAGCTACAATGCTCCATTCTTTGTAACACGGTTCCGGGAGGCCCTTTTCCACTATTCTACTTTGTTTGATGTGCTTGATACTAATGTGAGTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGTCGGAGGGTAATGAATGCTTTAGCTTGTGAGGGTTGTGAGAGGGTTGAGAGGCCCGAGACATACAAGCAATGGCAGGTTAGGAACACGAGAGCTGGATTTAGGCAACTGCCCTTGGATAAACATCTCATCAACAAATTAAGATCCAAGTTGAAAGATATTTACCACAGTGATTTCATGCTTCTTGAAGATGCCAACTTTATGCTGCAAGGTTGGAAGGGCAGAGTAGTTTATGCTTCATCTTGTTGGGTGCCTGCATAG 2238 0.4415 MDPRFEFNFINGFKPNQVPDTVVVEDQFLVPVNGMMRPFEFGFRDNSLVLPPDPNVAQNHVSFATDEESPLDEIDFSATVLRYINQMLMEEDLEAKSCMFHDSLALQAAEKSFYEAIGETHPSSIKTYHNVDSPEDSGFSDYGSSGTATSNGNSIESHWGNFDLTDYKPSILQTTFPTDFVFQASSIQSSMNTTNNFSVTDSGFLHSSTAAGCLDPTLFSKSESVLQFERGVEEANKFLPKVNPLVVDLENPSLRKVPPIQEEIKAERDEIFAEFRGRKNHGREDEESDSQDGRSNKQSAVYIDDSEISELLDKVLLGNGCRKEPAPLCICFADLPNGASSSSQKKLEETNKSGGGKSRVKKQGNTKGVVDLRTLLILCAQAVSSDDRVSANELLKQIRQHTSPLGEGTQRLAHCFANALEARLAGTGTQIYTALSYKRTSAADMVKAYQMYISACPFKKLSIIFANHTILQLAMEVESLHIIDFGIRYGFQWPALIYRLSKRVGGPPKLRITGIELPQPGFRPAERVQQTGLRLARYCDRFKVPFEFNAIAQKWETIRVEDLKIKENELLAVNSMFRFQNLLDETVVLNSPRDAVLSLIRKANPTIFIHGTVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVSREDPMRLMFEKEFFGRRVMNALACEGCERVERPETYKQWQVRNTRAGFRQLPLDKHLINKLRSKLKDIYHSDFMLLEDANFMLQGWKGRVVYASSCWVPA* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0592 745 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 744 IPR005202 -
Vra2g0592 745 Pfam GRAS domain family 372 742 IPR005202 -
Vra2g0592 745 ProSiteProfiles GRAS family profile. 363 743 IPR005202 -
Vra2g0592 745 MobiDBLite consensus disorder prediction 275 300 - -
Vra2g0592 745 MobiDBLite consensus disorder prediction 275 293 - -
Vra2g0592 745 PANTHER SCARECROW-LIKE PROTEIN 14 47 744 - -
Vra2g0592 745 MobiDBLite consensus disorder prediction 338 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0592 Vra-Chr2 4668989 4671940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0592 80 745 GRAS Transcription Factor Family AT1G07530 53.868 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra2g0592 GRAS 3.5e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0592 - - gmx:100815586 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0592 2 4668989 4671940 Vra2g0592 2 4668989 4671940 ECH
Vra4g0223 4 4945275 4948087 Vra2g0592 2 4668989 4671940 ECH
Vra4g0224 4 4959044 4961570 Vra2g0592 2 4668989 4671940 PCT