Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0591 ATGGAGCACCCAAACTTCTTCTTCGGTGAAGAAGAGGATGGCATGGCCCATCTCACAGACCCGCTTGTTTTTCCGACTTTGGATCCTTCTTCCAGAGACCCTTCGCTGGAAGACGACTTCTCAGAAACTGCAAAGTTCATCAGCCAGATCCTCATGGAAGAGAACGTCGAACACAAGCCATTCTACGACTCACTCACCTTGCAAGTTACCGAGAAATCTTTCTACGACGCTCTCGCCGGTAACCTACCTCCTTCCCCCAATCAACACCCCCTTGCTTTCAGTCCTGAAGCTGAAACCACCACTACCACCACCACCGCCAGCACCAGCATCAGCAGCAACAGCAGTAACAACAATTTTTCAGATGAAAATTCCAGTGAGTTGAAGCTTCCTTCTCCAGATTCTGTTTTTAAGTTTAACTCCCGCGCCCTTTCTCAACCGTCTCCGTCAATTACCGCCAACCATGGACTCCAAGATTTGGATTTTTCTATTGCCAAACTCTTATCACAGAATATTTTCAATGATGTTGACTCCGTTTCCCAGTTTAGGCGGGGCCTGGAGGAAGCTAGCAAGTTTCTTCCTCCGGGACCTAACCTTGTGACTGGTCTAGGTTCAAACGGAGAACAAGCGTTCAATAAGTTTGGAGATACTTCGTATGGGTTGAGTGGGAAAAATCACAAGAGGGACGAGAGATACGCTGTAGAGGAGGAAGAAGAAGAAGAAGGGAGAAGTAACAAGCAGACAGCACTTTCCCATGTCGATGAGAGTGACTTGTCTGATGCTTTCGATCGGGTGTTGCTTCATGAGGGAAACATGTGTAGCGAAATCAATTCTTTGCCAGGTGGAGCAGTGAAGGTTGATGAAGCAGATGGAGGGAAGAGTCGTTCAAGGAAAAAAGGGGGGAACAAGGAAACAGTTGATTTGAGGAATCTTTTGCTGATGTGCTCACAATCTGTGTATGCCAATGACAACAGGACGGCCAATGAATTGCTAAAGCAGATTAGGCAACACTCTTCTCCCTTTGGAGATGCATCACAGAGGTTGGCTCATTACTTTGCCAACGGCCTTGAGGCACGCTTGGTTGGGGATGGTACAGTTGCACAGGGCATGTATTCTTTTCTGACCTCTAAGAGGAGCTCTGCTGCTGAGTTTCTCAAGGCTTACCAGGTTTTCCTTTCCGCTTCCCCTTTCAAGAAGTTTACATATTTCTTTGCGAATAAAATGATTATGAAAGCAGCTGCAAAGGCAGAAACCATCCATATTATTGATTTTGGCATCCTATATGGTTTCCACTGGCCAATTCTTATTAAGTTTTTATCAGATAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGCTTTCGTCCCTCTGAAAGGATTGAGGAGACGGGTCACCGTCTTGCTAACTATTGTAAGCGTTACAAGGTTCCCTTTGAATACCATGCCGTAGCATCAAGGAACTGGGAAACTATTCAGGTGGAAGCCCTTAAAATTGAGAGCAATGAGTTTGTTGCTGTCAATTGTCATATGAGGTTTGAGAATTTACTGGATGAGTCTATTGAAGTGGACAGTCCTAGAAATGCAGTCTTGCATTTGATCAGGAAGATAAATCCAAATATTTTTACTCAGTCCATCACTAATGGATCATATAATGCTCCCTTCTTTGCCACAAGGTTTAGGGAGGCTTTGTTTCATTATTCTGCTATTTATGATATGTGTGACACTGTCATGCCTCGAGAAAACGAATGGAGGTTGATGATTGAGAGAGAGCTTTTGGGCCGGGAGGCTATGAATGTTATAGCATGCGAAGGTTCTGAGAGAATTGAAAGGCCCGAGACATACAAACAGTGGCAGGCTAGGAATACAAGGGCTGGCTTCAAGCAGCTCCCACTGAATCCGGAATTGATGACCAAGTTTAGGACCAAGTTAAAGGAATGGTACCACAGAGATTTTGTCTTTGATGAAGATAACAATTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCTTCTACTTGTTGGGTGCCGGCATAA 2055 0.453 MEHPNFFFGEEEDGMAHLTDPLVFPTLDPSSRDPSLEDDFSETAKFISQILMEENVEHKPFYDSLTLQVTEKSFYDALAGNLPPSPNQHPLAFSPEAETTTTTTTASTSISSNSSNNNFSDENSSELKLPSPDSVFKFNSRALSQPSPSITANHGLQDLDFSIAKLLSQNIFNDVDSVSQFRRGLEEASKFLPPGPNLVTGLGSNGEQAFNKFGDTSYGLSGKNHKRDERYAVEEEEEEEGRSNKQTALSHVDESDLSDAFDRVLLHEGNMCSEINSLPGGAVKVDEADGGKSRSRKKGGNKETVDLRNLLLMCSQSVYANDNRTANELLKQIRQHSSPFGDASQRLAHYFANGLEARLVGDGTVAQGMYSFLTSKRSSAAEFLKAYQVFLSASPFKKFTYFFANKMIMKAAAKAETIHIIDFGILYGFHWPILIKFLSDREGGPPKLRITGIEFPQPGFRPSERIEETGHRLANYCKRYKVPFEYHAVASRNWETIQVEALKIESNEFVAVNCHMRFENLLDESIEVDSPRNAVLHLIRKINPNIFTQSITNGSYNAPFFATRFREALFHYSAIYDMCDTVMPRENEWRLMIERELLGREAMNVIACEGSERIERPETYKQWQARNTRAGFKQLPLNPELMTKFRTKLKEWYHRDFVFDEDNNWMLQGWKGRILYASTCWVPA* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0591 684 MobiDBLite consensus disorder prediction 279 301 - -
Vra2g0591 684 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 28 683 - -
Vra2g0591 684 MobiDBLite consensus disorder prediction 221 249 - -
Vra2g0591 684 MobiDBLite consensus disorder prediction 287 301 - -
Vra2g0591 684 MobiDBLite consensus disorder prediction 215 254 - -
Vra2g0591 684 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 28 683 IPR005202 -
Vra2g0591 684 MobiDBLite consensus disorder prediction 92 128 - -
Vra2g0591 684 ProSiteProfiles GRAS family profile. 298 682 IPR005202 -
Vra2g0591 684 MobiDBLite consensus disorder prediction 85 128 - -
Vra2g0591 684 Pfam GRAS domain family 307 681 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0591 Vra-Chr2 4664054 4666997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0591 45 684 GRAS Transcription Factor Family AT1G07530 48.121 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra2g0591 GRAS 7.7e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0591 - - gmx:100795855 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0591 2 4664054 4666997 Vra2g0591 2 4664054 4666997 ECH
Vra4g0223 4 4945275 4948087 Vra2g0591 2 4664054 4666997 PCT
Vra2g0591 2 4664054 4666997 Vra4g0224 4 4959044 4961570 PCT