Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0590 ATGGAGCCCAACTTTCCCAGAGATGACCTGTTTGATGAATCGGAGAGCATATCATACCTCTCAGAATCACTTGGTTTTGCTAGAATGGATCCTCCACCGGAAGACAACGATTTCTCAGAAACCGTCAAGTTCATAAGCCAGATCCTCATGGAAGAGAACGTTCAGCTACAGAATCCATTCTATGATTCACTCACCTTGCAGGTTACCGAGAAGTCCTTCTATGATACTCTGGTGGGTAACCTTTCCCCTAATCAACACGCCCTTGTTCTCAGCCCCCAAGGTGAAACCACCAACAATAACAACAACAGCAGCTTTTTAGATGAACATTTCCCTTCCCCGGATTCTGTTTCTGCTTGTGCTTCTGCTCTTCAGTTTAACCCCCACACCCTTTCTCAGCCACCTTCATTTACTGTTAGTCATGGATTCTCAGATTTGGATTCTTCTATCGCCAAACTCATGGCACAGAATATGTTCAATGATGCTGATTCTATTTCCCAGTTCAGGAGAGGATTAGAGGAAGCTACCAAGTTTCTTCCTTTTGGCCCTGAGCTTGTAACTGGTCTCCATTCAAACGGTGAAGAACAGATCAATAAGTTTGGAGTTAATTCCCAGAGCAGAAAGAATCACGAGAGTCAAGAGAGAGATACCCCAGAAGAAGAAGGGAGAAGTAGTAAGCAATCGGCACTTAGCCTTGTTGATGAGATTGACATTTCAGATGCTATAGATCGGGTGTTTCTGAGTGTGGAAAACGTGGGTAGTGAACACAATTCCTTGCAGAGTGGAGCAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGACCGATCAAAGAAAAGAGGGAGGAAGAAGGAAACTGTGGATTTGAGGAATCTTCTACTGATGTGTGCACAATCTGTGTATGCCAATGACATTAGAGCTGCCACCGAATTACTAAAGCAAATTCGGCAACACTCCTCTCCCTTTGGAGATGCATCGCAGAGGGTAGCTCACTACTTCGCCAATGGTCTTGATGCACGCTTGGTTGGGGCTGGTTCTGGCGGTCATGAACAATTTTCTTTTCTGAACTCTCAGAGGATTACTGCTGCAGAGTACCTGAAGGCATATCAAGTGTTTCTATCTTCCACCCCTTTCAAAAAGTTTACATATTTCTTTGCAAACACAATGATTATGGAAGCTGCTGCAAAAATAGAAACCGTCCATATCATTGATTTTGGCATCCTGTATGGTTTCCAGTGGCCAATTCTTATAAAGTTTTTATCAAACAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGCTTTCGTCCATCTGAAAGGATTGAGGAGACGGGTCACCGTCTTGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAATACCATGCCATAGCATCAAGGAACTGGGAAACTATTCAGGTTGAAGCCCTTAAAATTGAGAGCAATGAGATAGTTGCTGTCAACTGTCACATGAGGTTTGAACATTTACTGGATGAGAGCACTGTTGAAGTGAACAGTCCTAGAAATGGAGTCCTGCATTTGATCAGGAAGATAAATCCGGATATCTTTACTCAGATCATTGTTAATGGATCATATAGTTCCCCTTTCTTTACCACACGGTTTAAGGAGGCACTGTTCCATTTTTCTGCTGTTTATGATCTGTTTGACACTGTCATACCTCGTGAAAATGATTGGAGAATGACGATTGAGAGAGAGCTTTTGGGTCGGGAGGCTATGAATGTTATAGCATGTGAAGGTTCTGACAGGGTTCAGAGACCTGAGACATACAAACAATGGCAAGTTAGGAATACAAGGGCTGGTTTCAAGCAGCTCCCATTGAAGAAGGAATTGATGGCCAAATTTAGGACTAAGTTAAAGGAATATCACAGAGATTTTGTCTTCGCTGAAGATAACAATTGGATGATTCAAGGTTGGAAGGGCCGCATTTTTAATGCTTCCACTTGTTGGGTGCCCACATAA 1995 0.4351 MEPNFPRDDLFDESESISYLSESLGFARMDPPPEDNDFSETVKFISQILMEENVQLQNPFYDSLTLQVTEKSFYDTLVGNLSPNQHALVLSPQGETTNNNNNSSFLDEHFPSPDSVSACASALQFNPHTLSQPPSFTVSHGFSDLDSSIAKLMAQNMFNDADSISQFRRGLEEATKFLPFGPELVTGLHSNGEEQINKFGVNSQSRKNHESQERDTPEEEGRSSKQSALSLVDEIDISDAIDRVFLSVENVGSEHNSLQSGAVKGEERDGGKDRSKKRGRKKETVDLRNLLLMCAQSVYANDIRAATELLKQIRQHSSPFGDASQRVAHYFANGLDARLVGAGSGGHEQFSFLNSQRITAAEYLKAYQVFLSSTPFKKFTYFFANTMIMEAAAKIETVHIIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGFRPSERIEETGHRLANYCKRYNVPFEYHAIASRNWETIQVEALKIESNEIVAVNCHMRFEHLLDESTVEVNSPRNGVLHLIRKINPDIFTQIIVNGSYSSPFFTTRFKEALFHFSAVYDLFDTVIPRENDWRMTIERELLGREAMNVIACEGSDRVQRPETYKQWQVRNTRAGFKQLPLKKELMAKFRTKLKEYHRDFVFAEDNNWMIQGWKGRIFNASTCWVPT* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0590 664 ProSiteProfiles GRAS family profile. 278 662 IPR005202 -
Vra2g0590 664 MobiDBLite consensus disorder prediction 207 222 - -
Vra2g0590 664 MobiDBLite consensus disorder prediction 256 281 - -
Vra2g0590 664 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 28 663 - -
Vra2g0590 664 Pfam GRAS domain family 287 661 IPR005202 -
Vra2g0590 664 MobiDBLite consensus disorder prediction 199 228 - -
Vra2g0590 664 MobiDBLite consensus disorder prediction 261 281 - -
Vra2g0590 664 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 28 663 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0590 Vra-Chr2 4656342 4661577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0590 41 664 GRAS Transcription Factor Family AT1G07530 43.705 1.30e-179 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra2g0590 GRAS 3.1e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0590 - - gmx:100795855 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0590 2 4656342 4661577 Vra2g0590 2 4656342 4661577 ECH
Vra4g0222 4 4935540 4937656 Vra2g0590 2 4656342 4661577 ECH
Vra2g0590 2 4656342 4661577 Vra4g0223 4 4945275 4948087 PCT