Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0589 ATGCTCTCCATGGATTCCCTTTTGGACAATTTTCCTGGTTCGGTAAATGGGTTCATATCTGAAAACGGTTCTGTCTCGTTGTTTACGAATCAGAACAGGGTAAGCGAGTTCAAGTTGGATGATTCATCTGTCTCGGTGTTTACGAATCAGAACGGGGGAAGTGAATTCAAGTTGGATGATTCGCGTTCCCCGTCGGAGTCTGTCTCTGATGATGCTCCCTCTTCTGGGACAAGCTCTGACGGAGAACACACAGAGAGTACTAAACTCAGCAATCCCATGCTCAGGTTTATAAGTGATATCCTCATGGATGAAGAGGATGATTTGGAGCGCAAACCCTGCATGTTGCAGGATTGTTTGAGACTCCAGGCTGCTGAAAAATCATTCTATGATGCTTTGGTTCATAGTTACCCATCGTCACCTCGTCAATTTAACGATAACCCTGACCCAGATGATAATTTTGGTGGAACCACTAGTTCTGAGAGTTACGGCAGTTATACCACTGACCATTCATGCGAGTCTGATAAGTTTAACGGTGCTGGTGATTTTGAATCTTATTTGCTACAAGGATCGCTGCATAATTCTCCGGAACACGCTTATGTTACTCCTGATCTGATTAGAGAGGCACAAGCTGGGTTTCATTTTTCAAATGGAGCTTGGAATTTGATTCAGTCGCAGAGCAAGCCGGGCCTAATTGAAGAGAGTGTGACGAGGACGGATAAAGGATCAAGGGAGAAGAGGAGCCATCTCATGAAAGATGATGTCTCACATGTAGAAGAGGAGAGAAGCAATAAGCTTTCAGCTGTCTACTCTGATGATTCGGAGTCATGTAGCATGTTCGATGAAGTGCTGCTTTGCAATGATGGCAAGAGTCCAGCCTTTTGTAAATCTGACCGTGAAACTTCATCATTACAGCTTGCTGATTCAGGAGGATCTAATGGGAAGAAAACACGTTCGAAGAAAGGTTCCAACAAGGGAAAAAATGCAAGAACAACGGTGGATTTATGGACTTTGCTAACTCAATGCGCACAAGCTGTGGCTAGCTTTGACCCAAGGACTGCAAATGAAATCCTCAAGCAGATTAGGCAGCACTCTTCACCTTTAGGCGATGGACTTCAGCGCTTGGCTCACTACTTTGCCGATGGCCTTGAGACAAGGTTAGCTGCTGGGACACCAAAGTTCATGCTGTTTCAGTCAGCATCTGCTGCAGATATGTTAAAAGCTTACAGAGTGTATGTCACATCATCACCATTTCACTGGATGTCGTTTTTCATGGCTAACCGTACTATTCTGAAGTTTACACAAAGTGAAAGCAGTATTCACATTATTGACTTTGGGATTAGCTATGGTTTCCAGTGGCCTTGCCTCATCCAACGGCTTTCACAAAGACCAGGCGGTCCTCCAAAGATTCGTATAACAGGAATTGATTTTCCTCAGTCAGGGTTTAGGCCAGCTGAAAGGGTAGAGGAGACGGGGCGACGCTTAGAGAAGTACTGCAAGAGATTTGGAGTCCCTTTTGAGTACAATTGCCTTGCTCAGAAATGGGAAACCATAAGACTTGAGGACCTCAAACTTGATAGGAGTGAAGTAACTGTGGTTAACTGTATGTACAGATTGAAGAACCTGTCGGATGAAACTGTGACTGTAGACTGTCCTAGAGATGCTGTGCTGAGGTTGATCAGGAGGATCAATCCGACCATCTTCATGCATGGGGTTGGCAATGGCACCTACAATGCTCCATTCTTCTTGACAAGGTTCAGGGAAGCACTCTTCCACTTCTCAGCATTGTTTGATATGTTTGAAGCTAATGTGCCTCGGGAAGATCCATCTAGACTTATGTTTGAGAAAGGGTTGTTTGGAAGGGACGCAATCAATGTCATAGCATGTGAGGGGGCAGAGAGGGTTGAAAGGCCAGAGACCTACAAGCAATGGCAGGTTAGGAATCAGAGAGCAAGGTTCAAGCAACTTCCATTAAGCAGAGACCTCGTGAACAAAGTAAAGGAAATGGTGAAAAAGGAATATCATAAAGATTTTACAGTAGATGAGGATGGCAAGTGGGTTTTGCAAGGATGGAAAGGGCGTATTCTTTTTGCTCTTTCCTGTTGGGTTCCTGCTTGA 2115 0.4468 MLSMDSLLDNFPGSVNGFISENGSVSLFTNQNRVSEFKLDDSSVSVFTNQNGGSEFKLDDSRSPSESVSDDAPSSGTSSDGEHTESTKLSNPMLRFISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDALVHSYPSSPRQFNDNPDPDDNFGGTTSSESYGSYTTDHSCESDKFNGAGDFESYLLQGSLHNSPEHAYVTPDLIREAQAGFHFSNGAWNLIQSQSKPGLIEESVTRTDKGSREKRSHLMKDDVSHVEEERSNKLSAVYSDDSESCSMFDEVLLCNDGKSPAFCKSDRETSSLQLADSGGSNGKKTRSKKGSNKGKNARTTVDLWTLLTQCAQAVASFDPRTANEILKQIRQHSSPLGDGLQRLAHYFADGLETRLAAGTPKFMLFQSASAADMLKAYRVYVTSSPFHWMSFFMANRTILKFTQSESSIHIIDFGISYGFQWPCLIQRLSQRPGGPPKIRITGIDFPQSGFRPAERVEETGRRLEKYCKRFGVPFEYNCLAQKWETIRLEDLKLDRSEVTVVNCMYRLKNLSDETVTVDCPRDAVLRLIRRINPTIFMHGVGNGTYNAPFFLTRFREALFHFSALFDMFEANVPREDPSRLMFEKGLFGRDAINVIACEGAERVERPETYKQWQVRNQRARFKQLPLSRDLVNKVKEMVKKEYHKDFTVDEDGKWVLQGWKGRILFALSCWVPA* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0589 704 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 54 703 - -
Vra2g0589 704 MobiDBLite consensus disorder prediction 234 257 - -
Vra2g0589 704 ProSiteProfiles GRAS family profile. 325 702 IPR005202 -
Vra2g0589 704 Pfam GRAS domain family 336 701 IPR005202 -
Vra2g0589 704 MobiDBLite consensus disorder prediction 50 89 - -
Vra2g0589 704 MobiDBLite consensus disorder prediction 138 167 - -
Vra2g0589 704 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 54 703 IPR005202 -
Vra2g0589 704 MobiDBLite consensus disorder prediction 303 327 - -
Vra2g0589 704 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0589 Vra-Chr2 4649058 4651730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0589 245 704 GRAS Transcription Factor Family AT1G07530 56.531 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra2g0589 GRAS 9.7e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0589 - - gmx:100815586 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0222 4 4935540 4937656 Vra2g0589 2 4649058 4651730 PCT