Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0582 ATGAATTCCGACACGCAACACGGAACGCCGTCGTATTGGTGCTACAGCTGTACCCGCTTCGTTCACCTCTCATCTCAGGCCACCATCGCTTGCCCTCACTGCCAGAGTGGCTTTGTTGAAGAGATCCGTGCCGAGGTCTCGCCGCGCCACCGTCTCAGCCCTTTCCCCGACGACCATCTTTCGCTACGCCGACAGGGATTCCGCCGCCGCCGTCGCGATGCCGCTGGCAACCGCTCCCCCTTTAACCCCGTCATCGTTCTTCGGGGATCCGGCGATGACTCCGCCGCCGAACACGAAGGCGCCAGCACCTTTGAGCTCTTCTACGACGACGGCGACGGCACTGGCCTCCGTCCGCTCCCGCCCACCATGTCGGAGTTCCTCCTCGGCTCAGGCTTCGACCGCCTACTCGAACAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAACCCGCCGGCGTCCAAGGCGGCGATCGAATCCATGCCGACGGTCGAGATCGGTGAAGCGCAGGTCGAGACCGAGGCGCACTGCGCCGTGTGCAAGGAGGCGTTTGAGCTCCACGCGGAGGCGCGTGAGTTACCCTGCAAGCATATTTACCACTCGGATTGCATCCTCCCGTGGCTCTCCATGCGAAACTCGTGTCCGGTGTGCCGCCACGAGCTTCCTTCCGATTTGGAAACTAGGGCTCCGAGTCAGATCGACGAGGAGGCGATAGGGTTGACTATCTGGAGGCTTCCAGGAGGGGGATTCGCCGTGGGTCGATTTTCTGGCGGACGCAGGGCTGGAGAGAATCATTTCCCGGTGGTGTATACGGAGATGGACGGTGGACTGAACACGAACGGAGCTCCGAGGAGGATTTCTCGGTCGGTGAGAAGCAGTAGGGTTAGGGAGAGTCGAGGATTTGGTAGGGTTGTTCGCAACTTCTTTTCATTCTTTGGAAGGATCGGTTCTAGAAACTCTTCTTCGTCTTTGTCATCTTCTGAACATGGTTCCGTGAGTAGAAGCCGTAGTCGTGTGAGTTCAGTCTTCAGCAGAAGCTCACGGAGACATAGCAGAACTTTTGTTTTGGATGATTAA 1083 0.5882 MNSDTQHGTPSYWCYSCTRFVHLSSQATIACPHCQSGFVEEIRAEVSPRHRLSPFPDDHLSLRRQGFRRRRRDAAGNRSPFNPVIVLRGSGDDSAAEHEGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGEAQVETEAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRAPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGENHFPVVYTEMDGGLNTNGAPRRISRSVRSSRVRESRGFGRVVRNFFSFFGRIGSRNSSSSLSSSEHGSVSRSRSRVSSVFSRSSRRHSRTFVLDD* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0582 360 MobiDBLite consensus disorder prediction 320 345 - -
Vra2g0582 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 304 - -
Vra2g0582 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 304 - -
Vra2g0582 360 CDD RING-H2_RNF126_like 179 220 - -
Vra2g0582 360 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Vra2g0582 360 SMART ring_2 179 219 IPR001841 -
Vra2g0582 360 SUPERFAMILY RING/U-box 159 230 - -
Vra2g0582 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 226 IPR013083 -
Vra2g0582 360 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Vra2g0582 360 Pfam Protein of unknown function (DUF1117) 240 350 IPR010543 -
Vra2g0582 360 Pfam Ring finger domain 178 220 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0582 Vra-Chr2 4614700 4616204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0582 118 226 C3H Transcription Factor Family AT5G01980 46.789 1.97e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0582 - - gmx:100792874 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0213 4 4856563 4858102 Vra2g0582 2 4614700 4616204 PCT