Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0580 ATGGGGGAAGAGGTGAAGACGAGCGAGTACGACGAAGAGCGGGTCATGGAGTGGGAAGTGGGTCTCCCCACCGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATTCCGCCGGAGCTTGCCACAGCATTCAGCATATCTCCGGAGCCCCACCGCACCGCCCTAGACGTCAACCGGGCCTCACGCAACACGCTCTCCACGCTGCGCGGCGGTGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAACAACCACCAACACCACGAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGACACCGATCGCGACGGCTCGGGGTCGGATTCTCGGAAGCATCGGAAGATCGAGTGCGTGGCGGAGGAGGCGGACTCGGCGGTGCGGACGGAGAACTCGGCGGAGCGGACAGCAGTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTCGACGTGGTGGCTCACCTTGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAGTTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTGGCGAGTCATCTTCAGAAGTATCGGCTTTACCTGAAGCGGATGCAGGGTCTCTCCAACGAAGGTCCTTCTTCATCGGATCAGTTATTCGCTTCCACACCTGTGCCTCAGAGTTTGCACGACTCTGCTCCTCCCAGTGCCCATTCCCATGGTCAATCCCATGGCCATGCCAATGCTCATCTTCCTGTTCCCATGATGTCCATGCCCTATCCCCCTCCCATGATGTCCATGCCTGTCCTCGGCATGCCCCATGCCCATGGCCACATGGGAATCCCTATGCCTACTTCATCCGCCACCTCAGCTTACCATCCTTACAACATGCTGCACCAAAGGGATTGGACTCACCTTGCTCCCAATGATAAATGA 915 0.6 MGEEVKTSEYDEERVMEWEVGLPTANDLTPLSQPLIPPELATAFSISPEPHRTALDVNRASRNTLSTLRGGGSVHQAFSSSNNHQHHEEDEEEEEEEEEDTDRDGSGSDSRKHRKIECVAEEADSAVRTENSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSAPPSAHSHGQSHGHANAHLPVPMMSMPYPPPMMSMPVLGMPHAHGHMGIPMPTSSATSAYHPYNMLHQRDWTHLAPNDK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0580 304 MobiDBLite consensus disorder prediction 89 103 - -
Vra2g0580 304 MobiDBLite consensus disorder prediction 201 243 - -
Vra2g0580 304 Gene3D - 136 199 - -
Vra2g0580 304 Pfam Myb-like DNA-binding domain 144 192 IPR001005 -
Vra2g0580 304 MobiDBLite consensus disorder prediction 65 116 - -
Vra2g0580 304 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 297 - -
Vra2g0580 304 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 297 IPR044841 GO:0003700|GO:0006355
Vra2g0580 304 MobiDBLite consensus disorder prediction 65 81 - -
Vra2g0580 304 MobiDBLite consensus disorder prediction 201 236 - -
Vra2g0580 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 196 IPR017930 -
Vra2g0580 304 SUPERFAMILY Homeodomain-like 138 197 IPR009057 -
Vra2g0580 304 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 141 193 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0580 Vra-Chr2 4588694 4591250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0580 1 224 G2-like Transcription Factor Family AT3G46640 60.905 6.72e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra2g0580 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0580 - - aprc:113858844 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0580 2 4588694 4591250 Vra2g0580 2 4588694 4591250 ECH