Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0573 ATGGAATCTGATCATGATCATCAGCAAGCAGCAATATCTGAAAATCCCTCTGATGGGGAGGACCAAGGTGCAACTCACGTGGCATCCAGGTCCTACGAGTGCAACTTCTGCAGGAGGGGCTTCTCCAATGCACAAGCACTGGGGGGGCACATGAACATCCACAGAAAAGACAAAGCCAAGCTCAAGCAACAACAATCTTCAAATCAACCATCTTTGGACAAGGTTGTCCCTCCACAGGATCAGACCAAGTCTGGTGAAGAACGGAACACGCCAAAATGGAATTGGAATGTGTCCCAAGAAGAACATGCCTCCTCTAGAGCATCTCACACAAGGCAACAGCTTCCACTCTTTGAAGAATCTCCAACCAGCAGTGAAACACTGAAGCCACAAGGTCAAAATACCACTGAAGGAGCTTTGTCATCTACCCGAGATTCATCGTTGAAGTTAGACCTTGAACTCAGACTGGGACTTGAACCACAGGATTCCTCACCAGAAACGGGTACAAGAAATTTTTTTTGA 519 0.4701 MESDHDHQQAAISENPSDGEDQGATHVASRSYECNFCRRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQPSLDKVVPPQDQTKSGEERNTPKWNWNVSQEEHASSRASHTRQQLPLFEESPTSSETLKPQGQNTTEGALSSTRDSSLKLDLELRLGLEPQDSSPETGTRNFF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0573 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Vra2g0573 172 Gene3D Classic Zinc Finger 19 93 - -
Vra2g0573 172 PANTHER OS07G0101800 PROTEIN 1 164 - -
Vra2g0573 172 MobiDBLite consensus disorder prediction 48 172 - -
Vra2g0573 172 MobiDBLite consensus disorder prediction 63 146 - -
Vra2g0573 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 164 - -
Vra2g0573 172 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vra2g0573 172 MobiDBLite consensus disorder prediction 1 28 - -
Vra2g0573 172 SUPERFAMILY beta-beta-alpha zinc fingers 29 59 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0573 Vra-Chr2 4522753 4523271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0573 11 156 C2H2 Transcription Factor Family AT3G09290 37.179 1.08e-18 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g0573 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0573 - - vun:114170729 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0573 2 4522753 4523271 Vra2g0573 2 4522753 4523271 ECH