Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0566 ATGCAATCTCTAAAGTCACACCCTGCTCTTTTATTTGCACTTTTCAATCAATTCTCTTCTCAGTCTCTGACATCCTTCCTCTCTTTCTCAACTAAATGCCGTTGCCTACACTTCAACGAAACCACTTCAATGATTGATTACCTAAATTCCAACTTCCAGTTCTCCAAAACCCAATCCCTTTATATCTCCAAACGTGTTTCACGGGGCAAATTCCCTCAAAACCCCTCATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCGCAAAGCCAGATTCTCTCCGTGATTCGTCAAAGACCCCAGATACTGTTTACAGACGTTGACAAAATCTTAAGATCCAAAATTGAGTTCTTTCAGATGTCTGGATTCCAGGGTCGCGAGTTATGCAGCTTCATTTCAAAGCATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTGTGCGACCAGAAAGATTTTATTCTTGTGTTGCACAGATGTGGCTGGATTCTCCCAAAGTACAAAAGGTTTATGGATAATGCCGTCTTCTTGGAGAGGTGTGGCATTCTTGGGACTCATCTTGCATTGCTACTCAAACTTCACCCAAGGCTTTTCATTGCACAACAGTCCACTATTCAAAACCGTGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGCTGTTTGAGCGATAAAACATTTGAGAGAAAGCTGAAACTAATTAATAGTTTTGGGTTTTCCAACGATGAGGGCCTACAAATGTTCAAGAGAACCCCGACTTTGTTCAGAACATCAGAGATGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCACACAGTTATGCTGCCTAAGTCAGTCCTTATTCACCGGCCTCAGATTTTAATGTACAGCATGGAGGATCGTGTGCTTCCTCGATATAAAGTCTTCCAGCTGTTGAAATCAAAAAATCTCTGCAAGAAAGTCCCCAATTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTTTTGGACAAGTATATATCACAGTTCAGGGAAAATGCAGAGGAGTTATTAGTAGCATACAAGGGTCATTATCTGGAAGCATAA 1134 0.4048 MQSLKSHPALLFALFNQFSSQSLTSFLSFSTKCRCLHFNETTSMIDYLNSNFQFSKTQSLYISKRVSRGKFPQNPSSVLTFFKQIGFSQSQILSVIRQRPQILFTDVDKILRSKIEFFQMSGFQGRELCSFISKHPSILTHSLKKTLVPSVEAIRKIVCDQKDFILVLHRCGWILPKYKRFMDNAVFLERCGILGTHLALLLKLHPRLFIAQQSTIQNRVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLINSFGFSNDEGLQMFKRTPTLFRTSEMKLKVGMKFFLHTVMLPKSVLIHRPQILMYSMEDRVLPRYKVFQLLKSKNLCKKVPNYIHVLCLSEEMFLDKYISQFRENAEELLVAYKGHYLEA* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0566 377 PANTHER CGI-12 PROTEIN-RELATED 39 373 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 Pfam mTERF 151 255 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 Pfam mTERF 79 170 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 Pfam mTERF 244 351 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 SMART mt_12 300 331 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 SMART mt_12 233 263 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Vra2g0566 377 PANTHER EMB|CAB62602.1 39 373 - -
Vra2g0566 377 Gene3D Transcription termination factor 3, mitochondrial 42 180 IPR038538 -
Vra2g0566 377 Gene3D Transcription termination factor 3, mitochondrial 181 362 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0566 Vra-Chr2 4451109 4453179 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra2g0566 mTERF 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0566 K15032 - vvi:100268158 330.872