Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0562 ATGGAAAACGGGGAAGCCACCAGCTTGGTGGAAGAGAGGATAATGCAGGAAATTGAGATACCCATTGCATCTGAAAGACTTGATGTTCTTCCTATGAAGGCAGAGTCATCGTGCTGTTCTGGCTGTCCTTTTTCTGGACATGAAAATAGTGTTGTGACATCAAAAGAGTCTTCGAAGTCGGCAAAGAAACTTTGTGGTCTTATTGTTTTCTATGGAATTGTCATGGTTGTGGAACTTATTGGTGGAATAAAAGCTCACAGCCTAGCTGTCATTGGTGATGCAGCACACTTGCTTTCTGATATTACTGGATTCTCTATCTCTCTCTTTGCAGTGTGGGCTTCAGGTTGGGAGGCAACACCACATCAATCTTTCGGATACAATCGTCTCGAGGTTTTGGGGGCTCTTATATCTGTTCAGTTAATCTGGTTGATATCTGGTTATTTGATATATGAAGCAGTTGGTAGAATTCTTCTACAAGAGGCCAGTGTGAATGGAAAGGTCATGCTTGCAATTGCAACATTTGGGTTTGTTCTTAACTTTATCATGGTTGCATGGATTGGTCATGATCACGGTCATCATCATCATCATCATCATCATCATCATCATCATCATGGTTGTGAAGACTCTGGTCATGATCATAGTCATCATCACTGCCACACAGACCATGATCATGGCAATAAGGAGCTATCTATGATAAGTGATGAGGAGAGTGTTACCCTGGTTTCAAGTAATCACAGAAATACAAATGTCTTGAACCTAAATCTTCAGGGGGCGTATTTGCATGTCATGGCTGATATGATTCAATCTGTTGGAGTGATGATTGCCGGAGCCATAATATGGGCTGAACCTAAGTGGTTTATAGTAGATCTTGTGTGCACTCTTGTATTCTCTGTTTTATCTTTAAGTGCTACCCTTCCCATGCTTAGGAATATTTATGGCATTCTCATGGAAGGGACCCCAAGTGAGATAGATATCAGCAAGCTGGAAAATGGCATTAGAAATATCAAGGGAGTGCAGGATGTTCATGACTTGCACATTTGGGCTATAACTGTTGGAAAACTTGTTCTTTCTTGCCATGTAGTGGCTGAACCTGGCATAAGTTCCATTGATTTACTAGGCGTGATTAAACATTACTGTGAAAAAACATATCAAATACAGCATGTAACCATACAAATTGAGTAA 1182 0.4069 MENGEATSLVEERIMQEIEIPIASERLDVLPMKAESSCCSGCPFSGHENSVVTSKESSKSAKKLCGLIVFYGIVMVVELIGGIKAHSLAVIGDAAHLLSDITGFSISLFAVWASGWEATPHQSFGYNRLEVLGALISVQLIWLISGYLIYEAVGRILLQEASVNGKVMLAIATFGFVLNFIMVAWIGHDHGHHHHHHHHHHHHHGCEDSGHDHSHHHCHTDHDHGNKELSMISDEESVTLVSSNHRNTNVLNLNLQGAYLHVMADMIQSVGVMIAGAIIWAEPKWFIVDLVCTLVFSVLSLSATLPMLRNIYGILMEGTPSEIDISKLENGIRNIKGVQDVHDLHIWAITVGKLVLSCHVVAEPGISSIDLLGVIKHYCEKTYQIQHVTIQIE* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0562 393 SUPERFAMILY Cation efflux protein transmembrane domain-like 61 317 IPR027469 -
Vra2g0562 393 TIGRFAM CDF: cation diffusion facilitator family transporter 62 393 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Vra2g0562 393 MobiDBLite consensus disorder prediction 205 226 - -
Vra2g0562 393 MobiDBLite consensus disorder prediction 196 226 - -
Vra2g0562 393 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 8 393 - -
Vra2g0562 393 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 320 393 IPR036837 -
Vra2g0562 393 Pfam Cation efflux family 68 316 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Vra2g0562 393 Gene3D Cation efflux protein transmembrane domain 60 315 IPR027469 -
Vra2g0562 393 PANTHER METAL TOLERANCE PROTEIN B 8 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0562 Vra-Chr2 4434103 4436936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0562 16 393 Inorganic Solute Cotransporters AT2G29410 49.344 1.31e-116 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0562 K14689 - gmx:100777590 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0562 2 4434103 4436936 Vra2g0562 2 4434103 4436936 ECH