Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0551 ATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACGTCAAATCAAACCTCCATGATTTGTCTGACAATGATGATGATGGGAAGAGGAATGAGAAGGATCCCTGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGCTGAGAGTTGCCACCTCAGGATTCTCACCAGACAACATTGTCTCGGAACACGGTGAGAAGGCTCCAAATGTTGTCTACAAAGGGAGGCTTGAGGACGATAGGACGGTTGCTGTGAAGCGCTTCAATAAGTCTGCTTGGCCTGATTCTCGGCAATTCCTAGAGGAGGCACGTGCTGTGGGGCAGCTGAGGAATGAAAGATTGGCTAACTTGGTTGGGTGCTGCTGTGAGGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCTAAACACCTTTTTCATTGGGAAGCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACTAATTTAGCCTTCACACCTCCAGAGTACTTGAGGACAGGAAGAATCACTGCTGAAAGTGTAGTTTACAGTTTTGGCACACTATTACTTGATCTTCTGAGTGGAAAGCATATCCCACCGAGTCATGCACTTGATCTTATACGAGGCAAAAATTTCCTGTTGCTAATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGACGGAACTGAGTTAGTGAGATTAGCTTCGCGCTGTTTACAATATGAACCTCGCGAGAGACCAAATGTTAAGTCGCTCGTGACTGCTCTGACCCCTCTTCAGAAAGAAACTTCGGTACCGTCATATGTTTTAATGGGCATACCAGATAGGAGTCTGTCATCAAAGGAAACAGTTTCATTAACACCTTTTGGTGACGCTTGTTCCAGAAGAGATCTGACTGCAGTACATGAGATTTTGGATAAAGTGGGCTACAAGGATGATGAAGATGTTGCTAATGAGCTTTCCTTTCAAATGTGGACAAATCAAATACAAGATACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCTACAGCCATTGACTGCTATACACAATTCATCGATGGTGGAACCATGGTATCACCTACCGTGTATGCCAGACGCTGCTTATGCTATCTGATGAATGACATGGCTCAAGAGGCACTTGGAGATGCCATGCATGCTCAATCAATATCTCCAACCTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGAACAACACTGGAAACCAGGAAGTATAGAAACTGA 1479 0.4476 MGARCSKFSLCWWPSHVKSNLHDLSDNDDDGKRNEKDPWGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYKGRLEDDRTVAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETSVPSYVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAVHEILDKVGYKDDEDVANELSFQMWTNQIQDTLNSKKQGDSAFHARDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQEALGDAMHAQSISPTWPTAYYLQAAALFSLGMDNDAQESLKDGTTLETRKYRN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0551 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 492 IPR045845 GO:0004672|GO:0009742
Vra2g0551 492 SUPERFAMILY TPR-like 390 488 IPR011990 GO:0005515
Vra2g0551 492 Pfam Protein tyrosine and serine/threonine kinase 73 311 IPR001245 GO:0004672|GO:0006468
Vra2g0551 492 ProSiteProfiles Protein kinase domain profile. 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0551 492 Gene3D Tetratricopeptide repeat domain 386 491 IPR011990 GO:0005515
Vra2g0551 492 SUPERFAMILY Protein kinase-like (PK-like) 39 318 IPR011009 -
Vra2g0551 492 Gene3D Transferase(Phosphotransferase) domain 1 137 328 - -
Vra2g0551 492 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 492 - -
Vra2g0551 492 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0551 Vra-Chr2 4353429 4357276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0551 45 323 Glycoside Hydrolase AT3G07070 34.405 5.84e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vra2g0551 PK_Tyr_Ser-Thr 1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0551 - - gmx:732542 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0551 2 4353429 4357276 Vra2g0551 2 4353429 4357276 ECH