Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0548 ATGAGGAAGCCCGAGCTGTCTGCAAAAAACAACTCCAACATTAATAACAAGCTTCGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGTCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCTCCACAAGAAGAGGAACTCATCGTCCATTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTGCCTGGAAGAACTGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTGAAGAACATGTCATCCAACACCTCACCAAATGGAAGCGACTCCTCATATGAGCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTAATACCCATCAAGATCAGCATGCTGATTTTATGCCTATGTTCAATTCATCATCATCTCCATCACCATCCATGCATGCCACAGTTCTCAATTCCATTATTGACAGGTTGCCTATGCTAGATCATGGACTAAACGTGCCAGTTTCTGGTGGATTCTTCAATGCTACAGGGCCATGCTTCTCAACGCAAAGTGGAGTTGATCACAAAGGTTTTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACCTGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGCATCATCCTTAATAACTGCAGCAACAAGAGAACTGAAAATAGGGCTGGAGTGGAGAATTTATTTCAACAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAACGATGTTTCATCCTTTCCCTTTCTTGATTTTTCCAATATCCAATAA 984 0.4217 MRKPELSAKNNSNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNGSDSSYEPNKDLNMAGFTTNTHQDQHADFMPMFNSSSSPSPSMHATVLNSIIDRLPMLDHGLNVPVSGGFFNATGPCFSTQSGVDHKGFYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSIILNNCSNKRTENRAGVENLFQQELTMGEWDLEELMNDVSSFPFLDFSNIQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0548 327 Gene3D - 74 144 - -
Vra2g0548 327 PANTHER MYB DOMAIN PROTEIN 55 1 324 - -
Vra2g0548 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vra2g0548 327 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vra2g0548 327 CDD SANT 75 115 IPR001005 -
Vra2g0548 327 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vra2g0548 327 PANTHER MYB TRANSCRIPTION FACTOR 1 324 - -
Vra2g0548 327 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vra2g0548 327 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vra2g0548 327 SMART sant 72 120 IPR001005 -
Vra2g0548 327 SMART sant 19 69 IPR001005 -
Vra2g0548 327 Gene3D - 17 73 - -
Vra2g0548 327 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Vra2g0548 327 CDD SANT 23 67 IPR001005 -
Vra2g0548 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0548 Vra-Chr2 4333472 4336343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0548 1 323 MYB Transcription Factor Family AT3G08500 44.693 4.23e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g0548 Myb_DNA-binding 9.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0548 K09422 - gmx:100786151 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0198 4 4760775 4762911 Vra2g0548 2 4333472 4336343 PCT