Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0537 ATGAGTTGGAACCCACACATGGATGTCCATTACAATACCATTAGTTATCCCTATAATACAGCAGGAAGCTTTATCGAATATTTTGAAGGTCTTACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAAAGTTCATACCCTTCAAATTCAAGCTTTTACAAGTTTGGACTATCTGAACCTGAGAATTCATCATACTATCGTTACAGTCATGGTTATGAGGTAAATCATCACGAACCACTGGTGGATGAATATAGGAGACCTTCGGAGAACTCATTGACAATCAACGAACAGACAGCAGCAGTAAACACAGAATGGGTTGAAGGTGGAAACACTGACACAAGAGACAATTCTATTGAATGTCCTCGAAGACATCACAGTAATTCAAGTGATTATCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAAGCTGTCGGAACTCAGAGCCGTGGTCTCACCCAAGAACAGATCTCCTCACTCCCAGTGTCGAAGTTCAAATGTGGGTTCTTCTTGAGGAAGAAGTCTCGGGGTGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGTATCACCTTGCCATGTAAACATCTTTATCACGCTAGTTGTGGGAACAGATGGCTCAGCATCAATAAGGCTTGCCCAATATGTTACACAGAAGTGTTTGCCGACAAGTCAAAGCACAAATAA 747 0.415 MSWNPHMDVHYNTISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSSFYKFGLSEPENSSYYRYSHGYEVNHHEPLVDEYRRPSENSLTINEQTAAVNTEWVEGGNTDTRDNSIECPRRHHSNSSDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKFKCGFFLRKKSRGERCVICQMEYKRGDKRITLPCKHLYHASCGNRWLSINKACPICYTEVFADKSKHK* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0537 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 - -
Vra2g0537 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Vra2g0537 248 SMART ring_2 196 236 IPR001841 -
Vra2g0537 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vra2g0537 248 SUPERFAMILY RING/U-box 195 243 - -
Vra2g0537 248 Pfam Ring finger domain 195 236 IPR001841 -
Vra2g0537 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0537 Vra-Chr2 4248135 4252652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0537 5 247 C3H Transcription Factor Family AT3G63530 43.373 2.79e-66 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0537 K19045 - gmx:100793907 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0537 2 4248135 4252652 Vra2g0537 2 4248135 4252652 ECH
Vra4g0191 4 4695812 4700049 Vra2g0537 2 4248135 4252652 ECH
Vra4g0191 4 4695812 4700049 Vra2g0537 2 4248135 4252652 PCT