Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra2g0536 | ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGTTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCATCACCTCCTCCCATCAATCCATCATTCTACTTTCCTTCCAATTATCATACCTATACTTCTCCTCCTCCTCCTAAAACAAAACTCCTTCCTTTCCTTCATCTAAGACATCAAGAACAAGAACATCATTATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATGTCTTGAATCTTCATTCAGTGCCATGGAAGTTCACAAGAAAAAGAAAGAGTTAAGTACATCATCATCATCCAAGTGCTTGGATGAAGAGGATGCTGTCACTGTGGCTTTACACTTAGGGCTTCCAACCACTGCTGCATCTGCTGATTTATCTTCAAGCTTATACTCAGCAGAAGTTTCAGACAAAGGAGAGAAAACCACTGATGCTTCGGGGTTACTGCCAGATAGAATTAACAGAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTAAGGCTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAACAACATCGAACATCCGAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACCTTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAAAGGTCCCTCAAAGATCATATCAAGGCATTTGGATATGGACACACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGTTCTGAAATTGAACAAGAAAATTAA | 1029 | 0.4198 | MTNSYRSNDLNFCLDLNSPCLLSSPSSSPPPINPSFYFPSNYHTYTSPPPPKTKLLPFLHLRHQEQEHHYEEEEEEEEEEEEEEECLESSFSAMEVHKKKKELSTSSSSKCLDEEDAVTVALHLGLPTTAASADLSSSLYSAEVSDKGEKTTDASGLLPDRINRGQYWIPTSAQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIEHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAHGNDCMNLDQDDDQAGSEIEQEN* | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra2g0536 | 342 | Gene3D | Classic Zinc Finger | 243 | 318 | - | - | |
Vra2g0536 | 342 | MobiDBLite | consensus disorder prediction | 65 | 90 | - | - | |
Vra2g0536 | 342 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 184 | 204 | IPR013087 | - | |
Vra2g0536 | 342 | SUPERFAMILY | beta-beta-alpha zinc fingers | 248 | 286 | IPR036236 | - | |
Vra2g0536 | 342 | Coils | Coil | 60 | 90 | - | - | |
Vra2g0536 | 342 | PANTHER | ZINC FINGER PROTEIN WIP2 | 82 | 342 | IPR043584 | GO:0003700|GO:0010468 | |
Vra2g0536 | 342 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 182 | 209 | IPR013087 | - | |
Vra2g0536 | 342 | MobiDBLite | consensus disorder prediction | 70 | 89 | - | - | |
Vra2g0536 | 342 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 82 | 342 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra2g0536 | Vra-Chr2 | 4240345 | 4243043 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra2g0536 | 118 | 340 | C2H2 Transcription Factor Family | AT3G57670 | 64.567 | 1.05e-115 | 338 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vra2g0536 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra2g0536 | - | - | gmx:100802239 | 481.1 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra2g0536 | 2 | 4240345 | 4243043 | Vra2g0536 | 2 | 4240345 | 4243043 | ECH | |
Vra4g0188 | 4 | 4655793 | 4658025 | Vra2g0536 | 2 | 4240345 | 4243043 | ECH | |
Vra8g0270 | 8 | 3466139 | 3469889 | Vra2g0536 | 2 | 4240345 | 4243043 | ECH | |
Vra3g0239 | 3 | 2724405 | 2727154 | Vra2g0536 | 2 | 4240345 | 4243043 | ECH | |
Vra4g0188 | 4 | 4655793 | 4658025 | Vra2g0536 | 2 | 4240345 | 4243043 | PCT |