Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0536 ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGTTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCATCACCTCCTCCCATCAATCCATCATTCTACTTTCCTTCCAATTATCATACCTATACTTCTCCTCCTCCTCCTAAAACAAAACTCCTTCCTTTCCTTCATCTAAGACATCAAGAACAAGAACATCATTATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATGTCTTGAATCTTCATTCAGTGCCATGGAAGTTCACAAGAAAAAGAAAGAGTTAAGTACATCATCATCATCCAAGTGCTTGGATGAAGAGGATGCTGTCACTGTGGCTTTACACTTAGGGCTTCCAACCACTGCTGCATCTGCTGATTTATCTTCAAGCTTATACTCAGCAGAAGTTTCAGACAAAGGAGAGAAAACCACTGATGCTTCGGGGTTACTGCCAGATAGAATTAACAGAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTAAGGCTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAACAACATCGAACATCCGAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACCTTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAAAGGTCCCTCAAAGATCATATCAAGGCATTTGGATATGGACACACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGTTCTGAAATTGAACAAGAAAATTAA 1029 0.4198 MTNSYRSNDLNFCLDLNSPCLLSSPSSSPPPINPSFYFPSNYHTYTSPPPPKTKLLPFLHLRHQEQEHHYEEEEEEEEEEEEEEECLESSFSAMEVHKKKKELSTSSSSKCLDEEDAVTVALHLGLPTTAASADLSSSLYSAEVSDKGEKTTDASGLLPDRINRGQYWIPTSAQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIEHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAHGNDCMNLDQDDDQAGSEIEQEN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0536 342 Gene3D Classic Zinc Finger 243 318 - -
Vra2g0536 342 MobiDBLite consensus disorder prediction 65 90 - -
Vra2g0536 342 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Vra2g0536 342 SUPERFAMILY beta-beta-alpha zinc fingers 248 286 IPR036236 -
Vra2g0536 342 Coils Coil 60 90 - -
Vra2g0536 342 PANTHER ZINC FINGER PROTEIN WIP2 82 342 IPR043584 GO:0003700|GO:0010468
Vra2g0536 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Vra2g0536 342 MobiDBLite consensus disorder prediction 70 89 - -
Vra2g0536 342 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 82 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0536 Vra-Chr2 4240345 4243043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0536 118 340 C2H2 Transcription Factor Family AT3G57670 64.567 1.05e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g0536 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0536 - - gmx:100802239 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0536 2 4240345 4243043 Vra2g0536 2 4240345 4243043 ECH
Vra4g0188 4 4655793 4658025 Vra2g0536 2 4240345 4243043 ECH
Vra8g0270 8 3466139 3469889 Vra2g0536 2 4240345 4243043 ECH
Vra3g0239 3 2724405 2727154 Vra2g0536 2 4240345 4243043 ECH
Vra4g0188 4 4655793 4658025 Vra2g0536 2 4240345 4243043 PCT