Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0530 ATGAACAACAACTGGCTTTCTTTCCCTCTTTCTCCCACTCATTCTTCCTTACCATCCTCCCATGATCTTCAAGCAACTCAGTACCACCAATTTTCCCTTGGGCTGGTGAACGAAAGCATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACACTCATAGCAGCAACGAGGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAGCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACAAACAACAGTCTGGTGCCTTTGCAAAACCCCGTGGTGGACACACCAAGCAATGAGTATCAAGAAAATGCTAACAGTAACTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAGGATTCTACATGTGAAACCAGTGGTGAAAATAGTACAAACACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACTTTCGGTCAGAGAACATCCATATATCGTGGAGTAACGCGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGACGCCAAGTTTATTTGGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCAGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCAATTAGCAACTACGAGAAGGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCTATAAGAAGGAAAAGTAGCGGTTTCTCTAGAGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCGATAAAGTTCAGAGGTCTCAACGCTGTTACAAACTTTGACATGAGCCGTTATGACGTGAAAGCTATTCTCGAAAGCAACACTCTCCCGATAGGAGGAGGCGCTGCAAAACGTCTGAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAACGTGAAGAGATGATTGCACTAGGCTCATCCACCTTCCAATATGGAACCTCAAGCTCTTCCAGGCTACACGCTTACCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAACCTCTGCTAACCTTGCAAAACCATGACATGAGTTCTCACTTCTCTCACCAAGACCCTTTACACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGTTTCTTCTTACCTCCAGAATAATCCTCAGTTCTACGGTGGCTACCTTCAGAACCATCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCATCTGTGTTGGAGAATAATAACAACAATAATAGCAATGTTGGTGGGTTTGCAGCAGGGAGTGGGTTTGGTATGGCTTCGAATCCATCGTCGGGTAACGCAGTGGGCGCGGCGGAGGAACTTGGCTTGGTGAAGGTTGACTATGACATGCCAGCCGGAGGTTACGGCGGTTGGTCGGCGGCGGCGGCGGAATCCATGCAGACGTCAAATGGTGGAGTGTTCACAATGTGGAATGAGTGA 1641 0.4546 MNNNWLSFPLSPTHSSLPSSHDLQATQYHQFSLGLVNESMENPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSELAALNEIQSNDSDYLFTNNSLVPLQNPVVDTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDMSSHFSHQDPLHQGYIQTQLQLHQQSGVSSYLQNNPQFYGGYLQNHPALLQGMMNMGSSSSSSVLENNNNNNSNVGGFAAGSGFGMASNPSSGNAVGAAEELGLVKVDYDMPAGGYGGWSAAAAESMQTSNGGVFTMWNE* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0530 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 545 - -
Vra2g0530 546 ProSiteProfiles AP2/ERF domain profile. 164 230 IPR001471 GO:0003700|GO:0006355
Vra2g0530 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 545 - -
Vra2g0530 546 Gene3D AP2/ERF domain 164 232 IPR036955 GO:0003700|GO:0006355
Vra2g0530 546 Gene3D AP2/ERF domain 266 326 IPR036955 GO:0003700|GO:0006355
Vra2g0530 546 CDD AP2 163 232 IPR001471 GO:0003700|GO:0006355
Vra2g0530 546 ProSiteProfiles AP2/ERF domain profile. 266 324 IPR001471 GO:0003700|GO:0006355
Vra2g0530 546 SUPERFAMILY DNA-binding domain 163 232 IPR016177 GO:0003677
Vra2g0530 546 SUPERFAMILY DNA-binding domain 265 326 IPR016177 GO:0003677
Vra2g0530 546 CDD AP2 265 326 IPR001471 GO:0003700|GO:0006355
Vra2g0530 546 Pfam AP2 domain 267 316 IPR001471 GO:0003700|GO:0006355
Vra2g0530 546 Pfam AP2 domain 164 222 IPR001471 GO:0003700|GO:0006355
Vra2g0530 546 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Vra2g0530 546 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Vra2g0530 546 SMART rav1_2 164 236 IPR001471 GO:0003700|GO:0006355
Vra2g0530 546 SMART rav1_2 266 330 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0530 Vra-Chr2 4180673 4184147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0530 3 546 AP2-EREBP Transcription Factor Family AT1G51190 63.697 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra2g0530 AP2 9.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0530 K09285 - gmx:100788471 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0530 2 4180673 4184147 Vra2g0530 2 4180673 4184147 ECH