Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0529 ATGGATTCGACGACAACAGCTCCTCCCCCGTTGCAGGAGCTGGAGCTCGACAACCTCAAAGCTCTCAAAGTCCTAGGAAAAGGTGCCATGGGGACCGTCTTCCTCGTCCACGACACCACCACCAACAACTTCCCCTTCGCCTTGAAAGTCGTCGACAAAACCTGCATCCACGCAAAGCGCGACGCTGAACGCCGCGCGCGTTGGGAAATCCAAGTCCTTTCAACTCTCTCCCATCCCTTTCTTCCTACCCTCCTGGGATCATTCGAGTCCCCACAGTTCTTAGCCTGGGCCCTACCCTACTGTCCCGGCGGCGACCTCAACGTCCTCCGCTACCGTCAAACCGACCACGCCTTCTCCCCCACCGTCATCCGCTTCTACGTAGCAGAAATCCTCTGCGCGCTCCACCATCTCCATTCTATGGGCATAGCATACCGTGACCTCAAACCAGAAAATGTTCTCATCCAAAACAACGGCCACATCACCCTCACCGATTTCGACCTCTCCCGCAAACTCACCCTCAAACCCAAACCCCTTCTTACTTCGATGCCCGTGCCCAATCCCAAGCTCAAAGAACCCCGCCGAAAACACCGTCGCAACTTTTCCCGCTGGATCCCCCTCCCTCCCCTCGACGGGAACCGTAGAAAGGCCAACTCCAACGCCCTCAAGAAAGCCAAGTCCGCGCGAGTCAGCCCGGTGAGTAGACGAAAACTGAGTTTCTCCAACGGCGAGCGCTCCAACTCGTTCGTCGGCACCGAGGAGTACGTCTCGCCGGAGGTCGTCCGCGGCGACGGCCACGAGTTCGCCGTTGACTGGTGGTCCCTCGGAATACTCATCTACGAAATGCTCTACGGTAAGACGCCGTTCAAAGGCAAGAATCGTAAGGAAACGTTCCGCAACGTCCTCACCAAGGCCCCGGAGTTCGTTGGCAAGAGAACCGCGCTCACGGACCTTATCGAGAAGCTCCTGATGAAGGATCCGACGAGGCGGTTGGGCTACACGCGCGGCGCTGAGGAGATCAAGGAGCATGAGTTCTTCCGAGGGGTGAAATGGGAGCATTTAACCGAGGTTGTGCGGCCGCCGTTCATTCCGTCGAGGGACGACGGCTCCGCGGAGTCGATGGAGAAGCTTTCCGGCGGGAATTCTGGCATGGATATTAGGGATTACTTTCAGAATCTTAAATCGGTGCCGGCGTCACCGTCAGAGTCACCGTCAGCGTTCCCATCATCGCCGCGGTGGCAGTTAAAGAGAAATGTTTCTCTAACGGAATTCTAA 1272 0.5708 MDSTTTAPPPLQELELDNLKALKVLGKGAMGTVFLVHDTTTNNFPFALKVVDKTCIHAKRDAERRARWEIQVLSTLSHPFLPTLLGSFESPQFLAWALPYCPGGDLNVLRYRQTDHAFSPTVIRFYVAEILCALHHLHSMGIAYRDLKPENVLIQNNGHITLTDFDLSRKLTLKPKPLLTSMPVPNPKLKEPRRKHRRNFSRWIPLPPLDGNRRKANSNALKKAKSARVSPVSRRKLSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWSLGILIYEMLYGKTPFKGKNRKETFRNVLTKAPEFVGKRTALTDLIEKLLMKDPTRRLGYTRGAEEIKEHEFFRGVKWEHLTEVVRPPFIPSRDDGSAESMEKLSGGNSGMDIRDYFQNLKSVPASPSESPSAFPSSPRWQLKRNVSLTEF* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0529 423 Gene3D Phosphorylase Kinase; domain 1 19 104 - -
Vra2g0529 423 MobiDBLite consensus disorder prediction 361 411 - -
Vra2g0529 423 PANTHER FLIPPASE KINASE 1-RELATED 14 397 - -
Vra2g0529 423 MobiDBLite consensus disorder prediction 393 411 - -
Vra2g0529 423 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Vra2g0529 423 Gene3D Transferase(Phosphotransferase) domain 1 242 364 - -
Vra2g0529 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vra2g0529 423 Pfam Protein kinase domain 21 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0529 423 Pfam Protein kinase domain 240 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0529 423 SMART serkin_6 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0529 423 ProSiteProfiles Protein kinase domain profile. 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0529 423 Gene3D Transferase(Phosphotransferase) domain 1 105 172 - -
Vra2g0529 423 SUPERFAMILY Protein kinase-like (PK-like) 16 409 IPR011009 -
Vra2g0529 423 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 14 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0529 Vra-Chr2 4159228 4160815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0529 14 423 AGC Kinase Gene Family AT3G20830 59.330 3.26e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra2g0529 Pkinase 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0529 - K08286 gmx:100785281 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0529 2 4159228 4160815 Vra2g0529 2 4159228 4160815 ECH
Vra4g0186 4 4643512 4645068 Vra2g0529 2 4159228 4160815 PCT