Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0525 ATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCACCAGCAGCCGACGAATTCAGGGCTGACACGGTATCGATCGGCTCCGAGTTCTTATTTTTCGAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAACGAATGTTGACGCGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGCCGATGCTGCTGCTGCTGATGCAGAGGATGCGCTTCCTACTCAAAATCCCTCAACCGTCGTTGCTGTTAAAGAAGAGGTTAATCAACAACCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCTCTTGTTCTCCAACAACAACATCAACAGCAGCAGCAGCAAACTAATATCAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACATTGGACGACCACCTTTGCCAAACCAGATTGAGACCGGTCGTAGAAGTGCTTCAAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAAGTGGTTATGCTGCTGTAAGAGGCATGGGGACTGTGGGAGCTGCTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAACGCACCAAACTACTCTTCGGGATTAATGTCATCAAGGGCTGAAATTGGAAACAAAAACAATACACAGAATAATGCAGAAAATGAAGGGTTTGCTGAAAGCCAGGGCAATGAATTCATCCCTGGTTTCCCCGTTGGTTCATGGGATGATTCTGTAATCATGTCTGACAATATGACAGGTCTGAAGAGACACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACCTACCCGAAAGTCAGAACGAAGCAGGAGGCCAACCTTCCACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACTTCGGCAGAAATGGCAGCCATTGAGAAGTTTCTACAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCGAAACGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTGCAAGATCTCGTCCCGAACATGGATAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTATTGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGAAAATCGCGATAAGTGTACGTGTTCACACAATCAGCAGCAGCAGCAGCAATAA 1254 0.4474 MESDLQQHPPMFLDHHQQPTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADADAAAADAEDALPTQNPSTVVAVKEEVNQQPKDMPLPPINNEPLVLQQQHQQQQQQTNINNYGSSAPQNFYQNIGRPPLPNQIETGRRSASNLIRHGSSPAGLFSNINIESGYAAVRGMGTVGAANNSTEEANFSPVTRMKNAPNYSSGLMSSRAEIGNKNNTQNNAENEGFAESQGNEFIPGFPVGSWDDSVIMSDNMTGLKRHREEDVKPFSGLNLPESQNEAGGQPSTALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSENRDKCTCSHNQQQQQQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0525 417 MobiDBLite consensus disorder prediction 1 24 - -
Vra2g0525 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 407 IPR036638 GO:0046983
Vra2g0525 417 Gene3D - 343 417 IPR036638 GO:0046983
Vra2g0525 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Vra2g0525 417 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Vra2g0525 417 Coils Coil 382 409 - -
Vra2g0525 417 SMART finulus 348 398 IPR011598 GO:0046983
Vra2g0525 417 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 412 - -
Vra2g0525 417 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0525 Vra-Chr2 4105581 4109546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0525 1 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.981 1.73e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra2g0525 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0525 - - gmx:100803833 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0525 2 4105581 4109546 Vra2g0525 2 4105581 4109546 ECH
Vra8g0257 8 3252600 3256138 Vra2g0525 2 4105581 4109546 ECH
Vra3g0228 3 2555703 2558754 Vra2g0525 2 4105581 4109546 ECH