Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0520 ATGTCCTCCACCACAGCATCCGGCGACGGCGCTCCATCCCTCCACTTCGATACGCCGGCTCTGGACCGGGAGTCAGCGGCGCTTCTCCACTCCATTTCCGAGCACGGCGGGTACGCGTACGTCAGCATGGCAGCGCTGGCGGCCGGGGGCGACATTCGCGCGGCGGAGGCGGCGTGTGAGATGGCGTGGGAGCAGCTGCACTCCGGGCCTTGGCACTCAGTGCTGCCGGTGTGGCGCGACGCGTACTCCATGGCTTGCCTCCACGTGGCTCGACACCACTATGGCAACGGCGAGTTCAGGGAGGCGCTTAGGGTTTTAGATTTGGGAATCATCATGGGAGGGACGCTCCTCCGCAAGGATTTGGACTTCGCCGTCGCGAAAGTGTCGGAAGAAACTCGAAGGAGCGTTAGGGTTTCTGAATTGGGGGACTCGGGACACCGGTTCGTCGATCGAGACTTTAATGTGGCAGAGGTGCTCCAACTTTTACCAATGAAGTCTCTTTCTTCTACGCTTGTGGTCAAGAAATCAGCGCTGTCGTTGGATAAATTCCTAAAGGATCATTACCTGACTCGCTCTCCGGTTATTATTAGCGATTGTATGGCTCACTGGCCAGCCAGCGCGAAATGGAATGATGAAGATTACTTGTTGAGAGTTGCTGGTGACCGCACAGTTCCGGTTGAGGTTGGAAAAAACTATTTATGTGCTGAATGGAAGCAAGAGCTGATTACTTTTTCAGAATTTATTCAGCGGATAAAGTCTGGTGCCTGTTCTCTTGGTGGTCCTACTTATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTGAGGAAAGATATTTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTACGGTCTCTCAATGCTTGGTTTGGTCCAGCAGGAACAGTAACACCATTACACCATGATCCGCATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCAACAATTCCAGCCAGGTTGATTTAGATGATGTAGATGAAAGGAAGTTCCCCAAGGTGCAAGAGTTGGAATTTGTAGACTGTATTTTGGAGGAAGGAGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGAGGTCTTTGACTACAAGTTTTTCAGTTAGCTTTTGGTGGAGTGAGGGTGACAATTCGGATGCATCCTAA 1242 0.5032 MSSTTASGDGAPSLHFDTPALDRESAALLHSISEHGGYAYVSMAALAAGGDIRAAEAACEMAWEQLHSGPWHSVLPVWRDAYSMACLHVARHHYGNGEFREALRVLDLGIIMGGTLLRKDLDFAVAKVSEETRRSVRVSELGDSGHRFVDRDFNVAEVLQLLPMKSLSSTLVVKKSALSLDKFLKDHYLTRSPVIISDCMAHWPASAKWNDEDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFIQRIKSGACSLGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLNNSSQVDLDDVDERKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGDNSDAS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0520 413 ProSiteProfiles JmjC domain profile. 271 413 IPR003347 -
Vra2g0520 413 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 36 407 - -
Vra2g0520 413 SMART cupin_9 262 412 IPR003347 -
Vra2g0520 413 Pfam Cupin-like domain 182 406 IPR041667 -
Vra2g0520 413 PANTHER - 36 407 - -
Vra2g0520 413 SUPERFAMILY Clavaminate synthase-like 177 406 - -
Vra2g0520 413 Gene3D Cupin 171 405 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0520 182 404 Acyl Lipid Metabolism Gene Families AT3G45880 24.286 2.84e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra2g0520 Cupin_8 7.9e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0520 K24444 - gmx:100813075 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0520 2 4067175 4072015 Vra2g0520 2 4067175 4072015 ECH