Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0507 ATGGACTCGGAGGATGACATGCACGACGCCAACGACATCGATTCCCTCGACGATGATTTCTACAGCGGCGAAACCGAGGATGCGCCCTTGGACTACTACAGCGATTACGACGATGAGGCCGAAGATTACTTCGAGGAAGCTGACAGGATTGAGTCTCGTCGCCCTGAGCAAAATTTTACCATTTTGAAGGAATCCGACATCAAACAAAGACAGGAAGAAGACGTCAATAGAGTAGCAACTGTTCTTTCCATATCAAGAATTTTTGCAAGCATACTACTTCGTTACTACAATTGGAGTGTCAGTAGAGTGCATGATGCATGGTTTGCTGATGAAGAACGAGTCAGAAAAGCAGTTGGTTTGTTGGAGAAGCCAATTGTCCAGCATGATAATAATACTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGGGCTAGAATTGAAATGGCTTCCTGTGGTCATCCCTACTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCTGGATGTTTAATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAGTCTTCTAAAATCTGATGAAGATAAGCAGAAATATGCACGTTATCTTCTTAGGTCATACATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATGTGCTGTCACTTTTGATGCTGGTAGTGGTGGGAATTACGATGTCTCTTGCCTCTGCTCATATAGTTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTAGACTGTGGGACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAATCTGAAAACATGAATTGGATACTTGCCAATTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACTTGCACACCGCCCTGTAAATATGAGTTTTGCTGGCTATGCCTCGGTGTATGGTCAGACCACGGTGAAAGAACTGGGGGTTTTTATGCTTGCAATCGCTATGAAACAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCACTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTGCAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTTATTACGGAGGCCTGGCTACAAATAATTGAGTGTAGAAGAGTACTGAAATGGACATACGCATACGGGTTCTACTTACCGGAGCATGAGCTTGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGCCTGGAGAGACTTCATCAATGTGCAGAAAAGGAACTTCAGCCATTCCTATGTGCTGATGAGCCATCTAGAGAGTTCAATGACTTTCGTACTAAACTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCGTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTTCCTTCAGCAGAGCAACGAGCTCAAAAAATGCTGCTGGTAGCAGTAAAGGGAGATCCGGAAGAGTAAAGGGAACATTTCGAACCAGCATGTCCAGCAGAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGTCAAATCTGCCACCACATGCCAGATGTGCTATCAACAGCGTAGATGA 1770 0.4356 MDSEDDMHDANDIDSLDDDFYSGETEDAPLDYYSDYDDEAEDYFEEADRIESRRPEQNFTILKESDIKQRQEEDVNRVATVLSISRIFASILLRYYNWSVSRVHDAWFADEERVRKAVGLLEKPIVQHDNNTRELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCGAAVGQDMISLLKSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCECAVTFDAGSGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHELAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADEPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGASFSRATSSKNAAGSSKGRSGRVKGTFRTSMSSRMNDDSHWCCEHCTYANVKSATTCQMCYQQRR* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0507 589 CDD RING-HC_RBR_TRIAD1_like 137 187 - -
Vra2g0507 589 Coils Coil 33 53 - -
Vra2g0507 589 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Vra2g0507 589 Gene3D - 265 520 - -
Vra2g0507 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 537 IPR031127 GO:0004842|GO:0016567
Vra2g0507 589 Pfam Ariadne domain 356 517 IPR045840 -
Vra2g0507 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 537 - -
Vra2g0507 589 Pfam IBR domain, a half RING-finger domain 286 333 IPR002867 -
Vra2g0507 589 Pfam IBR domain, a half RING-finger domain 206 269 IPR002867 -
Vra2g0507 589 SUPERFAMILY RING/U-box 207 276 - -
Vra2g0507 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 219 IPR013083 -
Vra2g0507 589 MobiDBLite consensus disorder prediction 1 32 - -
Vra2g0507 589 SUPERFAMILY RING/U-box 288 336 - -
Vra2g0507 589 SMART ibrneu5 206 269 IPR002867 -
Vra2g0507 589 SMART ibrneu5 273 343 IPR002867 -
Vra2g0507 589 MobiDBLite consensus disorder prediction 529 556 - -
Vra2g0507 589 ProSiteProfiles TRIAD supradomain profile. 133 347 IPR044066 -
Vra2g0507 589 SUPERFAMILY RING/U-box 132 218 - -
Vra2g0507 589 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0507 Vra-Chr2 3887926 3895965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0507 17 588 ARIADNE family AT1G65430 68.942 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0507 K11968 - gmx:100784195 1121.69