Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0501 ATGTATCCAAAACGGTCAGACCAAGATGGCCCTGATTTGAGACAAGTGCGCTCAAGTGACAGGATCAAGACAAGGCCAAACATGTATGGCCGACCATACTTGTTTTATAACCAAAATCTTAGGCGCACAAGGAAAAACAAGAACAAAACAAGGACTGCAGCTTCTCAGATTGCCAAAATGTTGCGTCCAGGGAATCGGAAACCACAAGATTCTAATGCTAATTCTGGCTCTGCCAACCTTCGCCGTTCAACAAGGAAGAGAAGGATTAATGTAAATCTTGAAGATTTTACAGATAGCTCTGGAGCTGAAGATGAAGACTTAATGAGACCTGCATATCCCTCATTGAGAAACCAGATTAAAAATAGAGTCAAACGGGATGGTTTGATGTCTTCTAAGCGCAAAAGAGCAGCCGATACTAAGCCAGCACCTCGACGTGAAGGCTTACGTCCTCGTCGTTCAAAGGGTGCTGTGATAGAACGATTGATTTCGGAATCAGATGATGAGCAAGACCTGTCAGAGGAAAAGGTTGATCAAGATGAAACAGAAAATGGAAATGATGCTGAGGAAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGACGCTGAGGGTGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGGAATCGTTCCGATGTTCGGAGGTTCTCTATGGAGGAAAGAAAGGCTCGGCCTAGGTCTCCTCGAAGAGTGTTACATCAAGGTATGGGTACCAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCAAGGCCTGAAGATTCTGATGACTCACTTCTTGTGGATGAGCTGGACCAAGGCCCAACTATTTCATGGGGGCGAGGTGGTAACAGATCTGGTCCACCTTGGCTTTTTGGAGGCTTAGACATGCATGGAACAACAGCTTTTGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTTACATCTGGGATTCAAACTGCTGGACCAAGCTCCAAGGGTGGAGCAGATATCCAACCCTTACAGGTTGACGACAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTATATCCGGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGAGTGTTGTTGTGTGGGCCCCCTGGCACAGGGAAAACATTGATTGCAAGGGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGTAAAGGAGCGGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAGATAGACGGACTTGCACCTGTGAGGTCTAGCAAGCAGGAACAAATTCACAATTCAATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGATTTGATCGAGAGTTTAACTTTCCCTTACCTGGTTGTGAGGCGCGTGCTGAGATATTAGACATTCATACTCGTAAGTGGAAACATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCCAGTTGTGTAGGTTACTGTGGTGCTGATCTGAAAGCTCTTTGTACTGAAGCTGCCATCCATGCATTTCGGCAAAAGTATCCACAAGTTTATACAAGTGATGACAAATTTGTTATAGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCAATGTCTACTATTACTCCTGCTGCTCATAGAGGAGCCATTGTGCACTCTAGGCCACTGTCTCTAGTAGTTCAACCATGTCTCCAGCGACATTTAGAGAAAGCCATGAGTGTTATATCTGATATTTTCCCTGCAGCTTCTATTGCATCTGAGTTGACTAAACTTTCAATGCTGTCCTACGGGTCTGCAATTCCACTTGTGTATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAGTTTCCTGTGCATTCATTAGGACTCCCATCTCTTCTGTCAGATCCCAGTGCAAAGACACCAGAAGAGGCATTAGTACATATATTTAGTGAAGCTAGAAGAACAACACCATCAATTCTTTATTTACCACAGTTTGATGTTTGGTGGGAAACTTCTCATGAGCAGCTCAGGGCTGTTCTCCTGACTTTGCTGGAAGAATTACCATCTGACCTGCCTATCTTACTGCTTGGTACATCCTCTGTTGAACCTGCCGAAGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCACCGCACAATTTATCAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTGATAGAAGCTGTTATGTCAATATTGTTGGAGGGAATCAACAAGAAGTCACAAGATACGGGATACCTCCCTGAACTTCCTAAGGCACCAAAATTGGCTACTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGCAGGTTACGAATGTGCCTTAGAGATATTTGCAACCGGATACTGTATGACAAAAGATTTAATGCCTTCCATTATCCAGTGTCAGACGAAGATGCACCAAATTACCGGTCAATTATACAGAACCCAATAGACATGGCTACCATCCTGCAGCATGTTGATAATGGCCAATATATTACATGTACTGCATTCATGCAGGATATCAATCTTATTGTATCCAATGCAAAGGCTTACAATGGAGAGGATTACAACGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTGCGTGATGCGGTGCATGGAATGCTCTCACAAATGGATCCAGCACTGATTGCTTATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAACTGTCTGATGAATTAGAGGATTCAACATTCCCTGCTTCTCCTGTTGTGCAGCTGGGTACTGGTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAACGTGGATCAGAGTTATGAGGCATTGAAGCGAGCTAAGAAGATCACCGAAGTGCATGCAGTTCAAATACTGATTTTAAAGTCCATTCAAATTGGGTTGATAGCAGAAGACAAGTCGCAAGATTCTGTTCCGCCAAAGTCTTCCCGGGAGCATCAACCTAATGACACTAATGCTAAAAGCCTTGAACCTATGTCAATTGAAGGAAACTTGCATGGAACTTGTACGAACAACCTTGCTGATGGTAATAGTCCCCAGGATGTCACAGTGCTAGATGATGAATTTTTAAGAAAAGTGGAGTCTGTCAAGCAACTTTTTGTGAAGCGAAGTGAAAGTTTCAGCATTCCACAACTTGAAAGGCTATACACAAGAATTATGAAGGGTGTGTTTGAAACAAAAAATAAAGGAGTGAATGGGGATCTTAAGTCTTCGGTTTTGAAGTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3642 0.4352 MYPKRSDQDGPDLRQVRSSDRIKTRPNMYGRPYLFYNQNLRRTRKNKNKTRTAASQIAKMLRPGNRKPQDSNANSGSANLRRSTRKRRINVNLEDFTDSSGAEDEDLMRPAYPSLRNQIKNRVKRDGLMSSKRKRAADTKPAPRREGLRPRRSKGAVIERLISESDDEQDLSEEKVDQDETENGNDAEENDADDGQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEERKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPTISWGRGGNRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIHAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSVISDIFPAASIASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFSEARRTTPSILYLPQFDVWWETSHEQLRAVLLTLLEELPSDLPILLLGTSSVEPAEVEEVPTSVFPHRTIYQVNMPCAKDRTLFFNLLIEAVMSILLEGINKKSQDTGYLPELPKAPKLATGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPIDMATILQHVDNGQYITCTAFMQDINLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALIAYCDKIASQGGPVQLSDELEDSTFPASPVVQLGTGTRMSARLRHVQPEVNVDQSYEALKRAKKITEVHAVQILILKSIQIGLIAEDKSQDSVPPKSSREHQPNDTNAKSLEPMSIEGNLHGTCTNNLADGNSPQDVTVLDDEFLRKVESVKQLFVKRSESFSIPQLERLYTRIMKGVFETKNKGVNGDLKSSVLKFLLNFVEDDANF* 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0501 1213 SUPERFAMILY Bromodomain 894 1007 IPR036427 GO:0005515
Vra2g0501 1213 MobiDBLite consensus disorder prediction 1094 1118 - -
Vra2g0501 1213 PANTHER BNAC08G44480D PROTEIN 1 1208 - -
Vra2g0501 1213 MobiDBLite consensus disorder prediction 166 223 - -
Vra2g0501 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 913 IPR027417 -
Vra2g0501 1213 SMART bromo_6 896 1003 IPR001487 GO:0005515
Vra2g0501 1213 Gene3D - 374 644 IPR027417 -
Vra2g0501 1213 MobiDBLite consensus disorder prediction 1 21 - -
Vra2g0501 1213 MobiDBLite consensus disorder prediction 1 27 - -
Vra2g0501 1213 PRINTS Bromodomain signature 928 944 IPR001487 GO:0005515
Vra2g0501 1213 PRINTS Bromodomain signature 944 962 IPR001487 GO:0005515
Vra2g0501 1213 PRINTS Bromodomain signature 962 981 IPR001487 GO:0005515
Vra2g0501 1213 CDD AAA 412 551 - -
Vra2g0501 1213 Gene3D - 685 818 IPR027417 -
Vra2g0501 1213 Pfam ATPase family associated with various cellular activities (AAA) 416 551 IPR003959 GO:0005524|GO:0016887
Vra2g0501 1213 ProSitePatterns AAA-protein family signature. 521 539 IPR003960 GO:0005524|GO:0016887
Vra2g0501 1213 MobiDBLite consensus disorder prediction 61 236 - -
Vra2g0501 1213 CDD Bromo_AAA 896 1006 - -
Vra2g0501 1213 ProSiteProfiles Bromodomain profile. 919 981 IPR001487 GO:0005515
Vra2g0501 1213 MobiDBLite consensus disorder prediction 119 165 - -
Vra2g0501 1213 Gene3D - 888 1016 IPR036427 GO:0005515
Vra2g0501 1213 Gene3D - 552 637 - -
Vra2g0501 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 641 IPR027417 -
Vra2g0501 1213 Pfam Bromodomain 906 977 IPR001487 GO:0005515
Vra2g0501 1213 PANTHER AAA DOMAIN-CONTAINING 1 1208 IPR045199 -
Vra2g0501 1213 SMART AAA_5 412 553 IPR003593 -
Vra2g0501 1213 MobiDBLite consensus disorder prediction 264 295 - -
Vra2g0501 1213 Pfam AAA+ lid domain 578 615 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0501 Vra-Chr2 3842941 3850277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0501 362 616 Calmodulin-binding Proteins AT3G56690 36.680 7.48e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0501 K22531 - gmx:100787765 2103.95