Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0485 ATGCCACTTCCAGCAAAACCAATGAGGGACTCCGACGAGTTGGCGAGCCCTTCGAACAACCTGTGGGTGGGGAATCTGGCGCCGGACGTCACTGACGCCGATCTCATGGAACTTTTCGCCAAATACGGTGCGCTCGACAGCGTAACTACTTATTCCGCTCGCAGTTACGCCTTCATCTACTTTAAGCGCGTCGAAGACGCCAAAGCCGCCAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCTAAGGCATGCAAACAGCTTTGGGTAGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGCTGAATTTCGTAAAATTGGTAAAATTGAGGATTTTAAGTTCTACAGAGACCGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTTCTCAGGCCATGAAAATAATGAATGGGAAGCGAATAGGTGGGGAGCATATTCGTGTCGACTTCCTTCGATCCCATACTATAAAAAGGGATCAGTTGTTTGATTATGGGCAGCTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGACAGAAAAGACCGCTGCTTTCACAGGCTCCAATGGGGAGGAAAGGCGATGCTCAACCAAGTAATGTTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATGAACAAATGCTGCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGAGGAATTATTCTACCGTAGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCTAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTACATATTCCAGCAATGACCTAGTACATGGCAGTGATTATCCTGGTTTTTTCGCTGGAAGTAATGGACCCAGGCCTGATGTATTGCTGAATGAGAATCCATTCCAACAGTTACAAATGGATGCATTTGGTCATAATCGTCCAATGGTGCCAAATAATTTTACTGGTCAATTACCACCTAGTGGTATTATCGGTCCAAATGTACGATTGCAACCTTTTGGTCCCCTTAGCCGTGTTGATTCTGTTATTTCTGGCCCTGAGTTTAATGAGATTAGTGCCCTCCACAAACTTCAGGATGGCAGCTCCAAGAGTAACATGGCTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCAGTTGCTAGGCATCCTACAAGATCCACCACCGGTGCATGGGATGTACTTGACATAAACCATATTCCTAGAGATTCTAAACGTTCAAGGATTGATGGACCCTTACCTGTTGACGAAGCCCCATTTCCTTTAAGGAATATAGATGATCGTGGATTAGCCCTGGAGCAATCTTATGGGATAGATCCATCAATTGATGGAGGTGGTTCTGGTCCATTTGCAAACATTCATGGAAAAAATCACCTTGGTCCAATGAGCTCAAGAATTACAGCTGGAGTACATGGTATGGTCCAACCTGATAATGATCATATTTGGCGTGGAATCATTGCAAAAGGTGGAACTCCTGTTTGTCGGGCTAGATGTGTACCAATTGGGAAGGGGATTGGGACCGAGCTTCCTGATGTTATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGATGATTTTGCATCATATACTGAATTCCTTCGCTATCTCAGTGCAAAAAATCGTGCTGGTGTTGCGAAATTTGTTGATAACACCACATTATTCTTGGTGCCTCCTTCTGATTTTCTCACTAGAGTTTTGAAAGTCAGTGGACCCGAGCGACTATATGGTGTGTTTCTGAAGTTTCCTCAAGTGCCAAGTAGTGCACCTATGCAGCAAGCATCGAACTTACCTGTACCGACAAGTCAGTTTATGCAGCAAATTCCTCTTTCACAGACTGAATATGGTTTGATTCCTGTCAAAGAGGAACAGGTTGTGTCAATGGATTATAACAGACAATTGCGTGAGGATTCTAAGCTTCCTAGTAAACCAGCCTACCTGTCTACAGGAGGGCCTCCTTCAGTTCATTCTGTACCTCCAGATTATGCTCCTAATAATGCTATTGCTGGGTCCCAAGCAGGAGTTGCATTAACTCCTGAGCTGATTGCAACTTTAGCATCTTTTCTCCCTTCAACTACACCATCATCTGCAATTGATGGTACCAAGCCTGGAGTAGGTTCCTCAACCATGAAGCCTCCTTTTCCTCCTGTGGCACCAAATGATGGAAGTCAATCCTATTTATGGAAACAAGACAGTCAAAGTGCTGATCAAACCACTCATCCTCCTCAACAGATGAGGAGTATGTATAGCGTTCACAATGCTCACTATCAGCCGTATCCACCAGCATCTGCTCCAGCTGGCAATCCTGCTCAAGTGGTCTCTAGCAGTTCTCACATCCAAGACACTGCAGCCACCATGCATCAGCAAGGTGCTGTTTCATCTAGAAACATGCCTAATTTCATGATGCCCACTCAAAGTGGACAGGTAGCTGCATCCCCTCATGGCAGTCAGCATTATCAACCTAAAGTCTCCCCAAGCAATCAGAAAGTCTTTGGAGTTGTGCAGGGAACGGATGCCCCTGTGTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATCCACTGTCTTTCCAGCAACCTAATAATTCTATTGCCTTAACCAGTCAAGTTAGTGGTGCTAATTCTTCACAACAGCAGACTGCCATGCCATATACAGTAGACCAAGTAAACTCGGGCACCCCAAATCAGCAACTTTCTGTTTCTGGAGTCAGTCAAGGCACACCAGAGGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGAAGCAACAACAAGCCGCAGGAGGTCATGGACCAGGAATTCAACAATGA 3003 0.4472 MPLPAKPMRDSDELASPSNNLWVGNLAPDVTDADLMELFAKYGALDSVTTYSARSYAFIYFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISPAVTKEELEAEFRKIGKIEDFKFYRDRNTACVEFFNLEDASQAMKIMNGKRIGGEHIRVDFLRSHTIKRDQLFDYGQLQGKSLGPSDAYSGQKRPLLSQAPMGRKGDAQPSNVLWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSTVEFRSVDEARRAKEGLQGRLFNDPRITITYSSNDLVHGSDYPGFFAGSNGPRPDVLLNENPFQQLQMDAFGHNRPMVPNNFTGQLPPSGIIGPNVRLQPFGPLSRVDSVISGPEFNEISALHKLQDGSSKSNMAPNWKRPSPPAPGMLSSPAPVARHPTRSTTGAWDVLDINHIPRDSKRSRIDGPLPVDEAPFPLRNIDDRGLALEQSYGIDPSIDGGGSGPFANIHGKNHLGPMSSRITAGVHGMVQPDNDHIWRGIIAKGGTPVCRARCVPIGKGIGTELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVSGPERLYGVFLKFPQVPSSAPMQQASNLPVPTSQFMQQIPLSQTEYGLIPVKEEQVVSMDYNRQLREDSKLPSKPAYLSTGGPPSVHSVPPDYAPNNAIAGSQAGVALTPELIATLASFLPSTTPSSAIDGTKPGVGSSTMKPPFPPVAPNDGSQSYLWKQDSQSADQTTHPPQQMRSMYSVHNAHYQPYPPASAPAGNPAQVVSSSSHIQDTAATMHQQGAVSSRNMPNFMMPTQSGQVAASPHGSQHYQPKVSPSNQKVFGVVQGTDAPVLYNSQAFQQPNNNPLSFQQPNNSIALTSQVSGANSSQQQTAMPYTVDQVNSGTPNQQLSVSGVSQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQQAAGGHGPGIQQ* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0485 1000 MobiDBLite consensus disorder prediction 740 793 - -
Vra2g0485 1000 CDD RRM3_Spen 98 167 - -
Vra2g0485 1000 Gene3D - 206 298 IPR012677 -
Vra2g0485 1000 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 999 - -
Vra2g0485 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Vra2g0485 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Vra2g0485 1000 SMART rrm1_1 217 285 IPR000504 GO:0003723
Vra2g0485 1000 SMART rrm1_1 97 164 IPR000504 GO:0003723
Vra2g0485 1000 SMART rrm1_1 20 87 IPR000504 GO:0003723
Vra2g0485 1000 MobiDBLite consensus disorder prediction 382 416 - -
Vra2g0485 1000 MobiDBLite consensus disorder prediction 685 704 - -
Vra2g0485 1000 SUPERFAMILY RNA-binding domain, RBD 195 294 IPR035979 GO:0003676
Vra2g0485 1000 Gene3D - 95 172 IPR012677 -
Vra2g0485 1000 Gene3D - 5 94 IPR012677 -
Vra2g0485 1000 CDD RRM3_Spen 21 90 - -
Vra2g0485 1000 SUPERFAMILY RNA-binding domain, RBD 17 169 IPR035979 GO:0003676
Vra2g0485 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Vra2g0485 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Vra2g0485 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Vra2g0485 1000 Pfam SPOC domain 506 623 IPR012921 -
Vra2g0485 1000 MobiDBLite consensus disorder prediction 773 793 - -
Vra2g0485 1000 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 999 - -
Vra2g0485 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Vra2g0485 1000 MobiDBLite consensus disorder prediction 942 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0485 Vra-Chr2 3729721 3741749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0485 2 176 Eukaryotic Initiation Factors Gene Family AT2G23350 25.728 6.50e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0485 - - gmx:100777570 1722.21