Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0477 ATGGAAGATCATTTTTCCCCAAAGGGGAAGGAAACTGGCTATTGCACATCTCCTTGTACCCAGTTGGAGGAATCAACATCGGTTGATGGTGGGATGAAAAAATCTGCTTCAGAGGACATGTTTAGCAACTTCTCCGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGTTCATCTATGACTTATCATAGTTTGGCAAATGTGTTTTCATCATTTTCCTCAGCATCATATCCACCATCCGATGGATTGAATCTGGTGGAACATGGCAATGGTCCATGCTTTATGACAGAAGTCAGTGAAATTCACAATGGTATAGAAAGTTCTCCTAGTTGTGAAGAAAGAGGTATATTTCAGCAAATGGACATCCAACTTGGTTTCTTAGATGAAGCAAATGATTCAAATAGCTTTGATTCAGAACAAAATCGTAACGGTTCATATCAGCAATTTAATACCTCAGACATGTGCAATTACATGATCTCAAGGTCATCAGGGAGGCCACTTGATGATAGAATGTTGAGGGCTTTGTCCTTCTTTATGGAATCAGTTGATGAGGGAATGCTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTATGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATCGAGAGGTGTCAAGGGCATTCACATTTTCTGCAGAAGGAAAGAAAGGATCATGTCCGGGGCTTCCTGCACGAGTGTTTACATCACATGTTCCTGAATGGACTTCCAATGTTGGCTACTATAATAAAACTGAGTACTTAAGGTTGGACCATGCATTGAATCATGATATTCGTGGATCTATTGCTCTTCCTGTTTCTGATATGCATTCTCATGAGCCATGTGCTGTATTGGAACTGGTCACTACAAAGGAAAAACCTAATTTTGACAGAGAATTAGAAATTGTTACTCATGCACTTCAGCTTGTAAATTTAAAGACTACTATGCCTCCACGACTTCTTCCCCAGTGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATAGTTGATGTGTTACGTGCCGTGTGTCATGCACATAGATTGCCACTAGCACTGACATGGATTCCCTGTTGCTACAGTGAGGGAATAGGAGATGAAGCTGAGAGAATACGAATCAAAGAAGGTCATACAAGTTCTAACGAAAAATGTGTGCTATGTATTGAGGAATCAGCTTGCTATATAAATGATGGAGCAATAGGAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGACAAGGTATAGCAGGAAAAGCTCTTCAATCAAATCATCCATTCTTCTACACTGATGTGAAGACATATGATATTAGTGAATACCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTAAGGAGTACCTATACCAATGATGATGATTACATATTAGAGTTCTTTCTGCCAGTGAACATGACAGGGAGTTCAGAACAACAACTTTTACTGGATAATCTCTCAGGTACCATGAGGAGAATTTGTAGGAGTTTGAGAACAGTTTCAGATGCTGAAATAACAGGAATAGAAGGATCCGTAGCTGGGCTTCCAAAGGAAAAGCTCACATATTTTTTTCCCATGTCCAGAAGAAACTCTCAGATAGCATTTATAAATGATGATAATGATTCGAATCAGAAGATGTCCTTGAAGGCATCTAACAATGGAATTGAAGCTGCTCATGGCCAGGTAATGAATGGACCAAGAAAACAGATTGAAAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTACAACAGTACTTCTCTGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCTCGGAAGATCAATAAAGTGAATCGTTCATTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGGGGGTTTATAGCTGGAGGATCACTGATGCAAGAAATTGACACACATAAATATATTCTGTTTCCTGAGAGAAGTGCTGTGAAAGACCCTAAGCATGCAACACAAAAACCAGTCTCAGTAGTTTCAGCACCAGGCAGCACTAGTGAGAATTCAACAATTAAGTTGGATGATGATGATGGTGTTTGTTTGGTGGAAAACAAGATTGTAGACTCAAGAAGTGCACTTTTATCTAATACCAGTGTGGGAGGATTTAAAAAAGACAATGCTTCTTCTGATGATTGTTGCGAAGATTCAAAATCAGTTGCCATGAATGATGGATCAAGCCAGAAGGCCAAGAATCAGGATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTACAGATGAGGCTGAAGTTGGAGTAGATGGGGGAGAAGGAATTGAAGAACATAACAACCTTGTAAATTCTTCAAGCACCACAAACTCATCCAATGGCTCTGGCTCTGGCTCAATGATGCATGGCAGCTCATCATGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTAAAACCAACTTCTGTCGATAGTGAGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCATCCGCAGGTTGTTTCCAGCTATATGAAGAAGTTGCAACAAGGTTCAAACTCCAAAACGGGTTATTCAAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGAGAATGACTCAGATTTGCAAGAGTGTGTAGAAATTTTGCATGACATTGGCACACGTTGTGTGAAGTTTCTTGTTCGTGATGTGCCTTGTGTTTTAAGCAGTTGTGACAGCAACAATTGCTTCTTGTCAGATAGCTCATAG 2904 0.3998 MEDHFSPKGKETGYCTSPCTQLEESTSVDGGMKKSASEDMFSNFSELMNFDTYAGWSNSSSMTYHSLANVFSSFSSASYPPSDGLNLVEHGNGPCFMTEVSEIHNGIESSPSCEERGIFQQMDIQLGFLDEANDSNSFDSEQNRNGSYQQFNTSDMCNYMISRSSGRPLDDRMLRALSFFMESVDEGMLAQVWVPIKHGDEFILCTSEQPYLLDPKLAGYREVSRAFTFSAEGKKGSCPGLPARVFTSHVPEWTSNVGYYNKTEYLRLDHALNHDIRGSIALPVSDMHSHEPCAVLELVTTKEKPNFDRELEIVTHALQLVNLKTTMPPRLLPQCLSSNKRAALTEIVDVLRAVCHAHRLPLALTWIPCCYSEGIGDEAERIRIKEGHTSSNEKCVLCIEESACYINDGAIGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICRSLRTVSDAEITGIEGSVAGLPKEKLTYFFPMSRRNSQIAFINDDNDSNQKMSLKASNNGIEAAHGQVMNGPRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSLMQEIDTHKYILFPERSAVKDPKHATQKPVSVVSAPGSTSENSTIKLDDDDGVCLVENKIVDSRSALLSNTSVGGFKKDNASSDDCCEDSKSVAMNDGSSQKAKNQDCPEQTCSISLVTDEAEVGVDGGEGIEEHNNLVNSSSTTNSSNGSGSGSMMHGSSSCSQSFENQKHSKVKPTSVDSESKMIVKASYRGDTIRFKFDPSAGCFQLYEEVATRFKLQNGLFKLKYLDDEEEWVMLENDSDLQECVEILHDIGTRCVKFLVRDVPCVLSSCDSNNCFLSDSS* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0477 967 ProSiteProfiles PB1 domain profile. 867 949 IPR000270 GO:0005515
Vra2g0477 967 ProSiteProfiles RWP-RK domain profile. 579 667 IPR003035 -
Vra2g0477 967 MobiDBLite consensus disorder prediction 754 789 - -
Vra2g0477 967 SUPERFAMILY CAD & PB1 domains 862 951 - -
Vra2g0477 967 SMART PB1_new 867 949 IPR000270 GO:0005515
Vra2g0477 967 Pfam PB1 domain 870 948 IPR000270 GO:0005515
Vra2g0477 967 Pfam RWP-RK domain 599 647 IPR003035 -
Vra2g0477 967 MobiDBLite consensus disorder prediction 705 726 - -
Vra2g0477 967 MobiDBLite consensus disorder prediction 769 789 - -
Vra2g0477 967 Gene3D - 863 946 - -
Vra2g0477 967 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 963 - -
Vra2g0477 967 MobiDBLite consensus disorder prediction 809 862 - -
Vra2g0477 967 MobiDBLite consensus disorder prediction 817 855 - -
Vra2g0477 967 PANTHER PROTEIN NLP8 5 963 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0477 Vra-Chr2 3664175 3671010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0477 1 963 NLP Transcription Factor Family AT2G43500 49.185 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vra2g0477 PB1 2e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0477 - - gmx:100793770 1602.03