Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0465 ATGACAATGAGAGACTTTTCATTTTATCAAAAAGCTTTAATCGTACAAGGAAATGGCAGGGAGATGTGGCAGATGGATTATTATCGGGGCAATCCAGTCTTCTTTGTTATCATCAACAACTCCAAATTACAGAAAGTGCCAGAGGGGTTTTTGAAGCATTTGAATGAAGACTTTCAGAATGCAGTTCTTATTGGTCCTTCTGGTGATAATTGGCAAGTGACTATTTTGAAGAAAGGAAATAACATTTATATGCACAATGGTTGGCCACAGTTTCTGACCGACAACTCAGTGATGATTGATGATTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAAATATTTGGTAAGAATGGATTGGAGAGGTTATGTTTCAAGCAAACAAGACAAGATCAAGTTCTGATCCCAAGTTTGGTGAGGACAAAGAAGAACACTCACAGAAGAACTTCTTCCAGTCCATTCCTCCACCAAGCCAAGCCTTGTAAAAAAGGTTTGTCTTTCAGCAACAAATTCTCATTTTCAAAGCTCAAGAGTTCAGTTAAAATTGAAAGTTCAGAAGCATGTTACTTGGCAGATTCTTTTACCTCTCGCAACCCTCACTGGAAGCACCTCATGACTAAATGCAATGTAGAAGATCACTGCACACTGAAAGTTCCAAAGGAGTTTTTGAAGAATTTGAATGAAGACTTGTCGAGTAATGCAGTTCTCAGTAGCTCTTCTTCTGGTGACAAGTGGCAAGTGAGTTTTCTAAAGAAAGGAAGCCAAGTGTATATGCAAAATGGTTGGCCACAGTTTGTGACAGATAACTCAATTGTGCTTCATGATGTACTGCTTTTTACGTATCATGGAGAGAACTGCTTCCATGTTCAAATTTTTAATAAGAATGGAGTGGAGAGGTTATGCCTCAAAGAAACAACACAAGAACAAGCTGCCATACCAGAGAAGACTACTCATGTATCCAAGTCTCATAAAAAAGATATGCCTTGCGGAAACAAGGGCTTCATTTTTACTGGTTCTGAGACAATGAAAACAAGTCAAAAACAAACTGCCACCCCAAGTTTGGCAAAGAAGAATAAAGAAAGAAAATTTTCTCCTGGAAAGTTTCATCAAGAAGACTTGTCTCCTCCGAAGGACTTCCCTACTCCTCAGCATTCAGTTGACATTGAAAGTTCGGAAGCATTGAAATTGGCCGAGTCCTTTACCTCTAGCAAACCTTATTGGAAGCACCTCATGACAAAATGTCATGTGGAAGGTCGTTGCGTATTGCCTATTGCTACTAAGTTTGCCAGAAAGTATATTCCTGAAGAAGTGAAACAGATCCATATTGGAAATTCCGAAGGAACACTTTGGAAAGTTCATGTGAGTTGGTCTAGAGGTTATGCTCACTTCGCTACAGGATGGTCAAATTTCGTTCGTGATAACAAGCTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGAAAACCTTCATTTGAGGGTTCACATATTCAAAACCAGATGTGCACCAAGTTAA 1524 0.3911 MTMRDFSFYQKALIVQGNGREMWQMDYYRGNPVFFVIINNSKLQKVPEGFLKHLNEDFQNAVLIGPSGDNWQVTILKKGNNIYMHNGWPQFLTDNSVMIDDFLLFTYHGGNCFHVQIFGKNGLERLCFKQTRQDQVLIPSLVRTKKNTHRRTSSSPFLHQAKPCKKGLSFSNKFSFSKLKSSVKIESSEACYLADSFTSRNPHWKHLMTKCNVEDHCTLKVPKEFLKNLNEDLSSNAVLSSSSSGDKWQVSFLKKGSQVYMQNGWPQFVTDNSIVLHDVLLFTYHGENCFHVQIFNKNGVERLCLKETTQEQAAIPEKTTHVSKSHKKDMPCGNKGFIFTGSETMKTSQKQTATPSLAKKNKERKFSPGKFHQEDLSPPKDFPTPQHSVDIESSEALKLAESFTSSKPYWKHLMTKCHVEGRCVLPIATKFARKYIPEEVKQIHIGNSEGTLWKVHVSWSRGYAHFATGWSNFVRDNKLMRGDTCIFELEENLHLRVHIFKTRCAPS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0465 507 CDD B3_DNA 208 296 IPR003340 GO:0003677
Vra2g0465 507 Gene3D - 389 503 IPR015300 -
Vra2g0465 507 Gene3D - 183 299 IPR015300 -
Vra2g0465 507 Gene3D - 18 122 IPR015300 -
Vra2g0465 507 SUPERFAMILY DNA-binding pseudobarrel domain 199 302 IPR015300 -
Vra2g0465 507 CDD B3_DNA 32 118 IPR003340 GO:0003677
Vra2g0465 507 ProSiteProfiles B3 DNA-binding domain profile. 204 298 IPR003340 GO:0003677
Vra2g0465 507 SMART B3_2 410 503 IPR003340 GO:0003677
Vra2g0465 507 SMART B3_2 204 298 IPR003340 GO:0003677
Vra2g0465 507 SMART B3_2 34 121 IPR003340 GO:0003677
Vra2g0465 507 MobiDBLite consensus disorder prediction 357 377 - -
Vra2g0465 507 SUPERFAMILY DNA-binding pseudobarrel domain 403 502 IPR015300 -
Vra2g0465 507 PANTHER B3 DOMAIN-CONTAINING 207 504 - -
Vra2g0465 507 PANTHER B3 DOMAIN-CONTAINING 31 228 - -
Vra2g0465 507 SUPERFAMILY DNA-binding pseudobarrel domain 29 122 IPR015300 -
Vra2g0465 507 Pfam B3 DNA binding domain 413 502 IPR003340 GO:0003677
Vra2g0465 507 Pfam B3 DNA binding domain 45 120 IPR003340 GO:0003677
Vra2g0465 507 Pfam B3 DNA binding domain 207 297 IPR003340 GO:0003677
Vra2g0465 507 MobiDBLite consensus disorder prediction 345 381 - -
Vra2g0465 507 ProSiteProfiles B3 DNA-binding domain profile. 29 121 IPR003340 GO:0003677
Vra2g0465 507 ProSiteProfiles B3 DNA-binding domain profile. 410 503 IPR003340 GO:0003677
Vra2g0465 507 CDD B3_DNA 414 501 IPR003340 GO:0003677
Vra2g0465 507 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 207 504 - -
Vra2g0465 507 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 31 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0465 Vra-Chr2 3602513 3607348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0465 202 502 B3 DNA Binding Superfamily AT3G18990 25.148 4.46e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra2g0465 B3 1.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0465 - - vra:106778427 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0465 2 3602513 3607348 Vra2g0465 2 3602513 3607348 ECH