Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0464 ATGACGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTCTCCAACCCAAACAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGGGGTGAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGGTTGAAAAAGGCAGACAACAAGTATTGGTTCCGTGATGGTTGGCAAGAGTTTATTCAGCACTATTCCATTGGCGTAGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCAGGTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCATACGATGCAGTAATGAAGGGCCTCACTTTGCAAATCTTCTTAAATTTTTTGAAGAAATGGATGATGAAGATTCCATTGAAATCTTGGATTCATCACCTTCCCATCTTGCTCCAAGTTCATTGCAAAGAGTTCTTGCTTGTTCAGTAGATAAAATGTCGCCTGCAAAGAGTTATACACCTCCAGCATTACAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGTGATGCGCATTGTTCCAAAAGTGCCAATTCACTGGATAATCGATTCACCAGAGACATAGGAGTTCAATTTAACGCAGTCGAGTTTAAAAGATCTACTGAAGAATTGAAACTACGTGCTTCCATGGAGGAAAGGATGAAAAAAACTGCAAGAAAGAAGCGGAAATCAGATGGACAGGAAGCCTCTGCTGAGCAAGAAGAGGAAGTTGACATGCGCTTCAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAGAGGGCCATCAGTGCAGCGAAAGCATTTGAACCACCTAATCCTTTCTGCAGGGTTGTCCTAAGGCCCTCCTACCTATACAGGGGATGCATAATGTATCTGCCATCCTGTTTTGCAGAAAAGCATTTGAATGGAGTTTCTGGGTTTATTAAACTTCAGATTTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGGGTAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGGGAAGGTGATGTGTGTGTGTTTGAGCTTCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACCATCTTTCGCATTACTGAGGAAGTGGGAATGTTGAAGCCTCCTCCTTCCCAGCAGAACCAAAACATGAGCTCAGCTAAACTGCTGAACAATCCCTTGCAGCAACATCTTAGTTCAACTCAAATGGTTAGAAATTAG 1290 0.4194 MTHPSFHKLLLPSTLQPKQLRLPDDFMRKYGGELSPIVTLSVPDGSVWRVGLKKADNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSGFNVHVFNLATSEINYQSAIRCSNEGPHFANLLKFFEEMDDEDSIEILDSSPSHLAPSSLQRVLACSVDKMSPAKSYTPPALQNLFNGSKLNSINWGEGGDAHCSKSANSLDNRFTRDIGVQFNAVEFKRSTEELKLRASMEERMKKTARKKRKSDGQEASAEQEEEVDMRFRFYESASARKRTVTAEERERAISAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRVGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFRITEEVGMLKPPPSQQNQNMSSAKLLNNPLQQHLSSTQMVRN* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0464 429 Gene3D - 272 392 IPR015300 -
Vra2g0464 429 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Vra2g0464 429 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 419 - -
Vra2g0464 429 ProSiteProfiles B3 DNA-binding domain profile. 295 390 IPR003340 GO:0003677
Vra2g0464 429 CDD B3_DNA 293 388 IPR003340 GO:0003677
Vra2g0464 429 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Vra2g0464 429 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Vra2g0464 429 Pfam B3 DNA binding domain 298 388 IPR003340 GO:0003677
Vra2g0464 429 Gene3D - 1 98 IPR015300 -
Vra2g0464 429 MobiDBLite consensus disorder prediction 232 253 - -
Vra2g0464 429 SMART B3_2 6 98 IPR003340 GO:0003677
Vra2g0464 429 SMART B3_2 295 390 IPR003340 GO:0003677
Vra2g0464 429 PANTHER B3 DOMAIN-CONTAINING 1 419 - -
Vra2g0464 429 SUPERFAMILY DNA-binding pseudobarrel domain 288 389 IPR015300 -
Vra2g0464 429 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0464 Vra-Chr2 3597312 3600981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0464 1 391 B3 DNA Binding Superfamily AT3G18990 52.030 5.22e-132 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra2g0464 B3 1.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0464 - - var:108340232 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0464 2 3597312 3600981 Vra2g0464 2 3597312 3600981 ECH