Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0463 ATGACTGGCGGAGAGAGGTACCCAGATTTCTTCAAAGTCTTCCTTCAAGAGCAGCACTCAGAAAGAATGTTGGAACGGTTACAGGGAAGGATCCCCGAGGATGTCCTCCTCAGGAATAGTAGTGAGAGAGTGTGGCATGTTAAAACACGGTTTTTTGGGGACAGATTATATTTCGATGAAGGGTGGAAGATTTTCCGTGAAGAAAACTGCTTAAGAAATGTAGATTTTCTGATATTTAGATATGACGGGGTTAATGAGTTCAGGGTCAAAATCCTTGAAAAATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGAGGAGGAGGGGAATGAAGAAGAGAAAGCAGCACCACAAGAAGTTGAAGAGACAGTGATAACACAGGAGGAACAAGCTGAGGACCGTGACACAGAGGACGAGGAAGACAGCCAAGATCAGGACTATGATGACGACGACAATGATGATAGTGATTTTGATGAGAACACGGAGATGGAAGAACAGAGTGAAGAAGAAATCTTCGTTGGTCCTGTTGGATACACCAGTCAAAGTTATCGAAAAACTTACAGAAGGGACACTGCATCAAGTTCCTACCCCCAGACTGATGACCCTTTCAAAGAAGAGGAATTTGACCCAGAAACGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCTAAACTCTACAGAAGTAGACCCAACGAATTGCATATTCCGGGAATCGCCATTCAAGATTTTTCTCTCAGTTTTCCTGAAAAGATTACCCTGAAATGTTGTCAACACTGCCAGCGAAAGGATATTCAGAGAAACAAATTGCAAGACTATCATCTCAACTTGGCACAAGAGACACCTATCAGAAAAAGATATTTAGAAGTGACGGGAAAAGTGTGTAGGTGGCAGGATGATAGAATATGTATCAAGGGTTGGGCAAACTTTAGCAGAAGGAACAAGATAAAAATTAATGATGTATGCATCTGTGAAGTTATATCAGACGAAGCCCAAGTAGTAAGAACATTTCTGGTGCACGTTATAGGTACTAGAAGGGAATAA 1044 0.4157 MTGGERYPDFFKVFLQEQHSERMLERLQGRIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFREENCLRNVDFLIFRYDGVNEFRVKILEKSTQCEKTLVKMEEEEGNEEEKAAPQEVEETVITQEEQAEDRDTEDEEDSQDQDYDDDDNDDSDFDENTEMEEQSEEEIFVGPVGYTSQSYRKTYRRDTASSSYPQTDDPFKEEEFDPETCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLSFPEKITLKCCQHCQRKDIQRNKLQDYHLNLAQETPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIKINDVCICEVISDEAQVVRTFLVHVIGTRRE* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0463 347 PANTHER B3 DOMAIN-CONTAINING 6 340 - -
Vra2g0463 347 MobiDBLite consensus disorder prediction 126 170 - -
Vra2g0463 347 Pfam B3 DNA binding domain 27 94 IPR003340 GO:0003677
Vra2g0463 347 SUPERFAMILY DNA-binding pseudobarrel domain 291 343 IPR015300 -
Vra2g0463 347 SMART B3_2 10 95 IPR003340 GO:0003677
Vra2g0463 347 MobiDBLite consensus disorder prediction 180 200 - -
Vra2g0463 347 Gene3D - 204 345 IPR015300 -
Vra2g0463 347 Gene3D - 3 98 IPR015300 -
Vra2g0463 347 MobiDBLite consensus disorder prediction 104 207 - -
Vra2g0463 347 CDD B3_DNA 29 92 IPR003340 GO:0003677
Vra2g0463 347 ProSiteProfiles B3 DNA-binding domain profile. 35 95 IPR003340 GO:0003677
Vra2g0463 347 SUPERFAMILY DNA-binding pseudobarrel domain 7 95 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0463 Vra-Chr2 3591253 3595784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0463 1 341 B3 DNA Binding Superfamily AT3G06160 24.157 2.22e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra2g0463 B3 4.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0463 - - var:108340234 589.341