Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0453 ATGCCTCCTTCTCAGCCACCCCATTGGGCCCCATCTCCATCTCCGTCTGCATCTCCGTCTGCATCTCCGACCCCAACGCCCACACCAATACTCAACAAATCATTCCTACCACCGCCGTCCAACACGCCGGCGGTTGACTTCAGTCCCCCTCTCATAGCAATGGTCGTTGTAGTCGCCGCTGCCTTTCTCGTCGTAACCTATTCTCGTCTCATCGCGCGCCACCTCAGGCCGCCCATCCACCGCCTCCTACACCGCTTCCGGCGGCGGCGATTCCCCCCTTCTTCCGTTGGCGACCTCGAGTCCTTACCCTACGAGTCTCCCTTTGACGGCCCCCGCGTGTTCTCTCCCTACGGTTTAGACGAAACGGTGATTAAAACGATACCGTTTTCGCTATACACCGCGAAATACGACGCTCGTTTCGAAGAGTCTCGCAACGACTGCGCCGTTTGCTTGCTGGAATTCGAAGACGAAGACTACGTGAGAACGCTTCCCGTTTGTTCACACACGTTCCACGTGGACTGCATCGACGCGTGGCTTCGCTCGCACGCTAACTGCCCTCTCTGCCGCGCAGGTGTCCTCTGCGCCGATTCGCCTTTCACTCCTATGATGGCCGCAAGAATCCGACCGAGCCTCGACGACGATACAATTCTTCACCGCATCAGTTTAGACCCTCTCATCGACCCCCCACCTCCTGTGGCAATATCGTCCGTGCCGGAGATAACACCCTGCATCGACGAGCAATCTCCCAGGAGGAACCAGAACCACGCGAACGTCAACTCAGAAGATTGTTTTAGGGATTTTCTTCTGAAGAGATCTTATTCGTTTGGGTTTGAACGGAGTGTCGCGTCGGAGAGGATGGTGATGGAAGCCACCACTGCGTCGCCATGGCGATACCGAAGAGGGAGTAATAGTTTCTGGAGCAAGAGGCCTTCGCCGTTTGGTTCTTTGGGAAAACCAAGGGTGTTTTCGTTTCGGTATTACAGAGGGATGAAATCACCGTTCTTCAGGCGGAGGGGATTCTTCCCGCTGTCGGAGTCCAGCGTGAGGTATGGCGGCGGCGGGAGCTCGTCGCGGCGGAGCAAGTCGATTGCAAGCCCAATGTTTCTTCGGTCGTCGGGTCTGGCAGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGACCCCGAGGCGCTGCTGTCGCCCGAGAGATTTAACCGGAGATGA 1206 0.5755 MPPSQPPHWAPSPSPSASPSASPTPTPTPILNKSFLPPPSNTPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPIHRLLHRFRRRRFPPSSVGDLESLPYESPFDGPRVFSPYGLDETVIKTIPFSLYTAKYDARFEESRNDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDDTILHRISLDPLIDPPPPVAISSVPEITPCIDEQSPRRNQNHANVNSEDCFRDFLLKRSYSFGFERSVASERMVMEATTASPWRYRRGSNSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGSSSRRSKSIASPMFLRSSGLAAAAFSSSRLRCGDPEALLSPERFNRR* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0453 401 MobiDBLite consensus disorder prediction 1 35 - -
Vra2g0453 401 CDD RING-H2_PA-TM-RING 146 189 - -
Vra2g0453 401 Pfam Ring finger domain 145 189 IPR001841 -
Vra2g0453 401 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 374 - -
Vra2g0453 401 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 374 IPR044675 -
Vra2g0453 401 SUPERFAMILY RING/U-box 131 194 - -
Vra2g0453 401 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Vra2g0453 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 193 IPR013083 -
Vra2g0453 401 SMART ring_2 147 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0453 Vra-Chr2 3503199 3506038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0453 40 401 C3H Transcription Factor Family AT3G18930 51.128 3.45e-96 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0453 - K19041 gmx:100806115 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0453 2 3503199 3506038 Vra2g0453 2 3503199 3506038 ECH