Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0442 ATGGAGATGGAAGATTACGCGAGCAGTGATGAGGATTACCATTACGACTCCGATCAAGATGACTCCGTCGAGGCCTACGAAAACGACGAGGATTACGCGTTGCTCTCCTCCAAGGGTCCCACAACCAAGGTGATTACAAAGGAATCACTTTTGGTTGCACAGAAGGAGGATTTGCGCAGAGTAATGGAGATGCTATCGGTAAGAGAGCAACACGCTCGTACACTGCTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTATATGTAGACAAGGGGAAAGCATTTCTCTTTGGTGAGGCTGGTGTTACTGTGGATGAACATCCCGACTCTGACTCATCCGTTCCTTCTACAGTAATGTGCTATATCTGCATGGAGGATGTTGCTAGGGTCGAAACAACAAGAATGGATTGTGGTCATTGCTTTTGCAACTCCTGTTGGATTGAGCATTTTATTGTTAAAATAAATGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTGGTTAGAACACTACTCAATAGAAAGCACCCTGATATGGCAGAGAAATATGAACGATTTCTTCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCCAGTACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAATTGTGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCATGCCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAGTCAGAAACTGTTAATTGGATAACCGTTCATACAAAACCATGCCCAAAGTGTCACAAACCAGTGGAGAAGAACGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAAAAAACGGCAGAACGTGCAAAGAGGGATCTATATCGGTATATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATAGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGTCTCTCCAGACTTTTCAGATCTAGGAGAGTCCTATCCTATTCATATGCTTTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTCGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATAAGAATGCAGATTCTCAACCTCTCAACAATTATTGATAAGCTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTGTTGGGTTCTCTCCATCTTGGCATTCATAGTATCGCTCCATACAAGTCAAAGGGCATCGAGAGGGCTTCAGAACTTTCAGTTTGCTGGAACAACAAATTAAATACTGGTGTAACAGCAGAACTTGATCGGCCTTCTGGATCAGGGAGTTCAGATGATAATGGATGCTCTTCTCGTAAACGTGCTAGAAAAGATGGTGTTGGAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1743 0.4137 MEMEDYASSDEDYHYDSDQDDSVEAYENDEDYALLSSKGPTTKVITKESLLVAQKEDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVTVDEHPDSDSSVPSTVMCYICMEDVARVETTRMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLNRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKLNTGVTAELDRPSGSGSSDDNGCSSRKRARKDGVGGGFFDLNLPAEFVDRN* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0442 580 MobiDBLite consensus disorder prediction 536 558 - -
Vra2g0442 580 SUPERFAMILY RING/U-box 118 205 - -
Vra2g0442 580 ProSiteProfiles Zinc finger RING-type profile. 122 170 IPR001841 -
Vra2g0442 580 MobiDBLite consensus disorder prediction 536 551 - -
Vra2g0442 580 Gene3D - 251 498 - -
Vra2g0442 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 208 IPR013083 -
Vra2g0442 580 SUPERFAMILY RING/U-box 263 320 - -
Vra2g0442 580 ProSiteProfiles TRIAD supradomain profile. 118 332 IPR044066 -
Vra2g0442 580 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 7 515 - -
Vra2g0442 580 Pfam IBR domain, a half RING-finger domain 193 255 IPR002867 -
Vra2g0442 580 SUPERFAMILY RING/U-box 193 261 - -
Vra2g0442 580 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g0442 580 SMART ibrneu5 263 328 IPR002867 -
Vra2g0442 580 SMART ibrneu5 193 255 IPR002867 -
Vra2g0442 580 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 515 IPR031127 GO:0004842|GO:0016567
Vra2g0442 580 Pfam Ariadne domain 332 580 IPR045840 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0442 Vra-Chr2 3456402 3460211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0442 62 544 ARIADNE family AT2G16090 71.253 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0442 K11968 - gmx:100783343 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0442 2 3456402 3460211 Vra2g0442 2 3456402 3460211 ECH