Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0429 ATGACTCAGGGAAAGGGAGTTGAAGCTGGCCAAACTGTGGGGGATTTCAATCCTTCCAAGAAGCCCAAAAGAAACAAGTATGCTTTTGGTTGCGCTATTTTGGCCTCCATGACATCCATTTTACTTGGCTATGATATCGGGGTGATGAGTGGTGCAGCCATGTACATAAAGAGGGACCTAAAGGTGTCGGACGTGCAAATCGAGATACTCTTGGGAATCATCAATCTCTACTCTCTCATAGGCTCATGCTTGGCCGGCAGAACTTCCGACTGGATAGGCCGGCGTTACACCATTGTCTTCGCCGGCACCATCTTCTTCGCCGGGGCAATTCTCATGGGTTTCTCTCCCAACTATCTCTTTCTGATGTTCGGGCGTTTCGTGGCTGGCATCGGCATCGGCTACGCCCTCATGATCGCCCCTGTCTACACCGCCGAAGTCTCTCCGGCGTCAACCCGTGGCTTCCTCACTTCCTTTCCCGAGGTTTTTATTAATGGTGGGATATTACTCGGATACATATCCAACTATGCATTTTCAAAGTTGTCATTGAAGTTGGGATGGCGAATGATGCTTGGGGTCGGTGTGTTTCCCTCGATTCTCCTGACATTGGGAGTGTTGGCGATGCCGGAATCTCCGCGGTGGCTGGTGATGAGGGGACGTTTGGGAGAGGCAACGAAAGTGCTTAACAAAACCTCCGACAGCAAGGAAGAAGCTCAACTGAGGCTGGCCGAGATCAAACAAGCCGCAGGGATACCAGAGAGTTGCAACGACGACGTCGTTCAAGTAACGAAACAAAGCACCGGCGAGGGCGTGTGGAAAGAGTTGTTCCTCCATCCAACGCCTGCGATTCGTCACATCGTAATTGCGGCGCTGGGGATTCACTTCTTCCAACAAGCGTCGGGCGTGGACGCCGTGGTTTTATACAGCCCCACAATCTTCGAGAAGGCTGGGATCACCGATGACACACAAAAGCTTCTGGCAACGGTGGCCGTTGGATTCGTGAAGACGATATTCATCTTGGTTGCTACTTTCATGTTGGACCGGGTGGGTCGTCGTCCCCTGTTATTGTCTAGTGTGGGGGGCATGGTGCTCTCGCTTCTGACTCTGGCAATCAGCCTTACGATCATCGATCAGTCGAAGAGTAAACTGATGTGGGCCATTGGATTGAGTATAACGATGGTGTTAACCTACGTGGCAACGTTTTCCATCGGTGCGGGACCCATCACGTGGGTGTACAGCTCTGAGATCTTTCCGTTGAGGTTGCGGGCGCAGGGTGCGGCTGCAGGTGTGGTGGTGAACAGAACGACAAGTGGCGTTATTTCAATGACTTTTTTGTCCCTGACTAAAGCCATCACTATTGGCGGAGCTTTCTTCCTGTATTTTGGCATTGCTGCCATTGGGTGGTTATTCTTCTACACCGTGCTTCCTGAGACACGGGGTAAAACACTCGAAGACATGGAAGGTTCTTTTGGTACTTTCAGAGCCAAATCCAACAACACCAACAACAATGGAATAGAAAATGGAAATGCCAAAGTTTCACAACTTCAGCTGGCGACCAATCTCCAGCCGTAG 1569 0.5099 MTQGKGVEAGQTVGDFNPSKKPKRNKYAFGCAILASMTSILLGYDIGVMSGAAMYIKRDLKVSDVQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGTIFFAGAILMGFSPNYLFLMFGRFVAGIGIGYALMIAPVYTAEVSPASTRGFLTSFPEVFINGGILLGYISNYAFSKLSLKLGWRMMLGVGVFPSILLTLGVLAMPESPRWLVMRGRLGEATKVLNKTSDSKEEAQLRLAEIKQAAGIPESCNDDVVQVTKQSTGEGVWKELFLHPTPAIRHIVIAALGIHFFQQASGVDAVVLYSPTIFEKAGITDDTQKLLATVAVGFVKTIFILVATFMLDRVGRRPLLLSSVGGMVLSLLTLAISLTIIDQSKSKLMWAIGLSITMVLTYVATFSIGAGPITWVYSSEIFPLRLRAQGAAAGVVVNRTTSGVISMTFLSLTKAITIGGAFFLYFGIAAIGWLFFYTVLPETRGKTLEDMEGSFGTFRAKSNNTNNNGIENGNAKVSQLQLATNLQP* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0429 522 PANTHER SUGAR TRANSPORTER 14 510 - -
Vra2g0429 522 CDD MFS_PLT 34 485 IPR044776 GO:0005351
Vra2g0429 522 Pfam Sugar (and other) transporter 31 487 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra2g0429 522 TIGRFAM SP: MFS transporter, sugar porter (SP) family 22 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0429 522 Gene3D MFS general substrate transporter like domains 21 491 IPR036259 -
Vra2g0429 522 PRINTS Sugar transporter signature 39 49 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0429 522 PRINTS Sugar transporter signature 122 141 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0429 522 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0429 522 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0429 522 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra2g0429 522 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 14 510 IPR045262 GO:0015144
Vra2g0429 522 Coils Coil 227 247 - -
Vra2g0429 522 ProSiteProfiles Major facilitator superfamily (MFS) profile. 31 478 IPR020846 GO:0022857
Vra2g0429 522 SUPERFAMILY MFS general substrate transporter 19 486 IPR036259 -
Vra2g0429 522 ProSitePatterns Sugar transport proteins signature 1. 85 102 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra2g0429 522 ProSitePatterns Sugar transport proteins signature 2. 127 152 IPR005829 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0429 Vra-Chr2 3332325 3334762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0429 18 521 Organic Solute Cotransporters AT3G18830 70.693 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0429 - - gmx:100800461 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0429 2 3332325 3334762 Vra2g0429 2 3332325 3334762 ECH
Vra2g0429 2 3332325 3334762 Vra5g1754 5 23683948 23686430 ECH
Vra2g0429 2 3332325 3334762 Vra5g2565 5 32409563 32412928 PCT