Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0416 ATGACTGAGGCCGGCACAACCACGGGTGTCAGCTTGAAGCTTCTCGTGTTGGTAGCTATTTTGGTCGTCTTCGCGGTGGTGATTCTGGTTCTTGTCTTCTTCCTGTGCTTGCGGGGCGGCCGGAGCTGGAAGCGGCGGAAGCTGGCGGCGAAACACAGCTCCGGGAGCATCCCTCTGGTGTCGAAAGAGATCATGGTGGTTAAGACCTCGGATCTCACCCCTGCGACGACGAGCGAGATTGGTGACGTGGAGGGTGATCCGAAGAAGGAGGCGGGCATGAAGGTCGAGATTGAAGCCGTGACAGCAGTGATGAAGAGCGAAGTTTCCGGTGGTGGGGCCCACCGCAGCGAGGTGTCGGTGGAGGATCCGAACATAGGGTGGGGTCGGTGGTACAGCATGAAGGAAGTGGAACTCGCCACGCGCGGTTTCGCAGAAGGGAATGTTATTGGGGAAGGTGGGTACGGTGTTGTGTACAGAGGAATTCTGCACGATGCTTCCGTCGTTGCTGTCAAGAATCTTCTCAACAACAAGGGTCAAGCAGAGAAGGAGTTTAAGGTAGAGGTTGAAGCTATTGGAAAAGTACGGCATAAGAATTTGGTTCGTTTGGTGGGATATTGCGCAGAAGGTGCTCGAAGGATGCTTGTTTATGAGTATGTTGACAACGGAAACTTAGAACAGTGGCTGCATGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGAATGAGAATTGCTATTGGGACAGCAAAAGGGCTAGCCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGGGATATAAAATCCAGTAACATTCTGTTAGATAAAAACTGGAATGCCAAGGTATCAGATTTTGGACTTGCCAAACTCTTAGGATCTGAGAAAACGCATGTGACTACGCGTGTAATGGGAACATTCGGATATGTTGCACCTGAGTATGCAAGCTCAGGTATGCTTAATGAGCGCAGTGATGTGTATAGCTTTGGAGTTCTACTCATGGAGATAATAACAGGAAGAAGCCCCATTGATTATTCAAGACCACCTGGAGAGATGAATTTAGTAGATTGGTTCAAGGCAATGGTGGCAAGTCGTCGCAGTGAGGAGCTAGTTGATCCGTTGGTTGAGATTCCACCCTCTCCAAGATCTTTGAAACGAGTTTTACTGATTTGTCTGCGGTGTATAGACTTGGATGTCGTTAAACGACCAAAAATGGGTCAAATTGTTCATATGCTTGAGACAGATGATTTCCCCTTTCGTTCTGAGCTACGCACAGTTAGAGAGAAAGATCCTTTGCCTTCTCATGCAGATGTTTCCATTAAAGTTCCTTATCCACCACCAAAGCATGCAGAAACCGTAGAAAAATCAAGATGGAGATGA 1386 0.4841 MTEAGTTTGVSLKLLVLVAILVVFAVVILVLVFFLCLRGGRSWKRRKLAAKHSSGSIPLVSKEIMVVKTSDLTPATTSEIGDVEGDPKKEAGMKVEIEAVTAVMKSEVSGGGAHRSEVSVEDPNIGWGRWYSMKEVELATRGFAEGNVIGEGGYGVVYRGILHDASVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMRIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVAPEYASSGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKAMVASRRSEELVDPLVEIPPSPRSLKRVLLICLRCIDLDVVKRPKMGQIVHMLETDDFPFRSELRTVREKDPLPSHADVSIKVPYPPPKHAETVEKSRWR* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0416 461 Gene3D Phosphorylase Kinase; domain 1 113 218 - -
Vra2g0416 461 SUPERFAMILY Protein kinase-like (PK-like) 121 416 IPR011009 -
Vra2g0416 461 ProSiteProfiles Protein kinase domain profile. 143 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0416 461 ProSitePatterns Protein kinases ATP-binding region signature. 149 171 IPR017441 GO:0005524
Vra2g0416 461 CDD STKc_IRAK 149 415 - -
Vra2g0416 461 Pfam Protein tyrosine and serine/threonine kinase 146 414 IPR001245 GO:0004672|GO:0006468
Vra2g0416 461 MobiDBLite consensus disorder prediction 436 461 - -
Vra2g0416 461 PANTHER OS01G0323000 PROTEIN 6 461 - -
Vra2g0416 461 SMART serkin_6 143 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0416 461 Gene3D Transferase(Phosphotransferase) domain 1 219 425 - -
Vra2g0416 461 PANTHER RECEPTOR-LIKE KINASE 6 461 - -
Vra2g0416 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0416 Vra-Chr2 3234845 3238341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0416 4 417 Trihelix Transcription Factor Family AT1G70460 42.143 8.49e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vra2g0416 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0416 - - gmx:100305442 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0416 2 3234845 3238341 Vra2g0416 2 3234845 3238341 ECH
Vra2g0416 2 3234845 3238341 Vra5g1764 5 23777615 23781435 ECH