Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0410 ATGGCTGCAGCCGATGTTGAGTTCAGATGTTTCATCGGTGGTCTTGCATGGGCCACCGACGGTGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAGTCCTTGAATCGAAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGGTTTTGGATTCGTGACTTTCTCTACGGAGCAGGCCATGAGAGACGCGATCCAAGGAATGAACGGTCAGAACCTTGACGGTCGTAACATCACTGTGAACGAAGCTCAGTCTCGTGGTTCTGGCGGAGGAGGTGGTGGCCGTGGTGGTGGTGGATATGGAGGTGGTGGGGGTGGATACAATCGTGGTGGAGGCGGTGGATATGGTGGTGGTGGTGGATATGGCGGTGGCGGTGGATACGGTGGTCGACGTGAAGGAGGGTACAGCCGTAACAGCGGTGGTTATGGTGGAGGAGGTGGTTATGGTGGTGGTAGAGATCGTAGTTATGGTGATAGTGGATCCCGCTCTCGTGGTGGTGATGGAGGAGACGGTGGTAGCTGGAACTAG 531 0.5461 MAAADVEFRCFIGGLAWATDGDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSTEQAMRDAIQGMNGQNLDGRNITVNEAQSRGSGGGGGGRGGGGYGGGGGGYNRGGGGGYGGGGGYGGGGGYGGRREGGYSRNSGGYGGGGGYGGGRDRSYGDSGSRSRGGDGGDGGSWN* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0410 176 PANTHER GEO13361P1-RELATED 1 136 - -
Vra2g0410 176 Gene3D - 2 120 IPR012677 -
Vra2g0410 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vra2g0410 176 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 136 - -
Vra2g0410 176 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vra2g0410 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vra2g0410 176 MobiDBLite consensus disorder prediction 81 176 - -
Vra2g0410 176 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0410 Vra-Chr2 3199360 3200388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0410 2 88 Eukaryotic Initiation Factors Gene Family AT2G23350 30.682 5.60e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0410 - K13195 ccaj:109800369 159.073