Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0409 ATGGCCTCAAGCTCTCTCAGCAAGCAAAAGTCTTCTGAGTCATCTTGGACTCCAAAGCAGAACAAGCTGTTTGAAAAAGCACTTGCAAAATATGACAAGGATACCCCTGATCGCTGGCAGAATGTGGCTGCAGCAGTTGGTGACAAATCCCCTGATGAAGTTAAGAGACACTATGAGATCCTCTTGGAGGATCTCAGCCACATAGAGTCTGGCCGAGTTCCTCTCCCCAAATACAGGTCCACCCCAACCACCACCACCACCAATGTTGATGATGAAGACAAGCTTCTGAAGTATCTTAAGCTGAATTGA 309 0.4693 MASSSLSKQKSSESSWTPKQNKLFEKALAKYDKDTPDRWQNVAAAVGDKSPDEVKRHYEILLEDLSHIESGRVPLPKYRSTPTTTTTNVDDEDKLLKYLKLN* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0409 102 SMART sant 12 64 IPR001005 -
Vra2g0409 102 ProSiteProfiles SANT domain profile. 11 58 IPR017884 -
Vra2g0409 102 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Vra2g0409 102 Gene3D - 6 75 - -
Vra2g0409 102 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Vra2g0409 102 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Vra2g0409 102 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
Vra2g0409 102 CDD SANT 16 62 IPR001005 -
Vra2g0409 102 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0409 Vra-Chr2 3194710 3196332 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra2g0409 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0409 - - gmx:100798314 143.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0409 2 3194710 3196332 Vra2g0409 2 3194710 3196332 ECH