Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0408 ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCACGAAGTGGCAACACCACCATCACGACAATCACCCACCTTACTATTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAACAATCTTCCTCAGAGTCCGGGCTTGGTCATGGCGCGTGAACGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATTGGACACCGGATTTGGATCCTCTTCCGGTTTTTTACCCAAGGAAAACGATAAGAAGAGGAAGGCGCTGAACTACAAGGTTGCTGCGGAGAGTGATAACAAGGACAAGAGAGTCAAAGTAAGTGGTGAGGAAGGAGAATCCCGAGTGACAAACCAAACCAGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGATTCTTCCAAGAATAATTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGGGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCTGGCAAAGCTGGAATGCTTGATGAAATCATTAATTATGTTCAGTCTCTTCAACGACAAGTCGAGTTCTTATCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGCTTGCCAGAGAGGCGTTTCCTTCGTGTGGTCAAGGTTTACCCAACATTGGGATGGTATCAGATATGAGTATGTGTAACAATCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTCGTATCATGTTGTGGTGGATTAATAAATAACGTGGGGATAAGCCCTCCGAATATGGGACTTCGAAGGAACATTAGTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGAAGGTGATTTTCAAAGCCTTTACAATGTTGCTTTTGATCAAGGGAGAGCAGCAGCAGCATCCTTTCCTTCTCAGCCATTTACAGGTGTAGTTGAAACTAGCAATCCGAAGATGGAGATTTAA 1185 0.4565 MLHCLNGSGNLGASCSDMTVLERQREATTKWQHHHHDNHPPYYSATEFHVNLVFSSSSNNLPQSPGLVMARERDDSALSQVLAHSLKPDPGLCPELDTGFGSSSGFLPKENDKKRKALNYKVAAESDNKDKRVKVSGEEGESRVTNQTSNRNGKSNANKNNRETSADSSKNNSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELLAREAFPSCGQGLPNIGMVSDMSMCNNPSYVQLNSTQQLVSCCGGLINNVGISPPNMGLRRNISTTHVPLPEAFIDSSCFTQILPSSNWEGDFQSLYNVAFDQGRAAAASFPSQPFTGVVETSNPKMEI* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0408 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 264 IPR036638 GO:0046983
Vra2g0408 394 SMART finulus 200 250 IPR011598 GO:0046983
Vra2g0408 394 MobiDBLite consensus disorder prediction 119 139 - -
Vra2g0408 394 Gene3D - 191 265 IPR036638 GO:0046983
Vra2g0408 394 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Vra2g0408 394 CDD bHLH_AtBPE_like 184 263 - -
Vra2g0408 394 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 109 373 IPR024097 GO:0006355
Vra2g0408 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Vra2g0408 394 MobiDBLite consensus disorder prediction 119 182 - -
Vra2g0408 394 MobiDBLite consensus disorder prediction 140 179 - -
Vra2g0408 394 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 109 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0408 Vra-Chr2 3175846 3178555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0408 5 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 37.368 2.15e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra2g0408 HLH 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0408 - - gmx:100794256 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0408 2 3175846 3178555 Vra2g0408 2 3175846 3178555 ECH
Vra2g0408 2 3175846 3178555 Vra11g0674 11 5394306 5396108 ECH