Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0388 ATGGCTTCCTCAAGTGGAACATGTTCGGGTTCATCCTCTCTGCTTCAGAACTCGGGCTCTGAGGAGGACTTGCAAGCGGTAATGGATCAGAGAAAGAGGAAGAGAATGATATCGAATCGCGAATCTGCACGGCGATCTCGCATGAGGAAGCAGAAGCACTTGGACGATCTGGTTACCCAAGTGGCTCAGCTGAGAAAGGAGAATCAGCAGATACTGACCACCGTCAACATCACCACGCAGCAGTTCTTGAGCGTTGAGGCTGAGAACTCGGTGCTCAGGGCTCAGGTGGGTGAGCTGAGCCACAGGTTAGAGTCTCTGAACGAGATCATCGAAGTCCTAAATGCGGGTTTTGGCAGCACCACCTTCGTTGAACCAACCACCAATAACACCACCTTCTTCAACCCCATGAACATGGGGTATCTGAACCACCCTATCATGGCTTCTGCAGATATATTGCAGTACTGA 465 0.5097 MASSSGTCSGSSSLLQNSGSEEDLQAVMDQRKRKRMISNRESARRSRMRKQKHLDDLVTQVAQLRKENQQILTTVNITTQQFLSVEAENSVLRAQVGELSHRLESLNEIIEVLNAGFGSTTFVEPTTNNTTFFNPMNMGYLNHPIMASADILQY* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0388 154 MobiDBLite consensus disorder prediction 1 52 - -
Vra2g0388 154 CDD bZIP_plant_GBF1 32 82 IPR045314 GO:0003700|GO:0006355
Vra2g0388 154 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
Vra2g0388 154 Gene3D - 29 85 - -
Vra2g0388 154 MobiDBLite consensus disorder prediction 25 52 - -
Vra2g0388 154 Coils Coil 47 74 - -
Vra2g0388 154 MobiDBLite consensus disorder prediction 1 24 - -
Vra2g0388 154 Pfam bZIP transcription factor 31 76 IPR004827 GO:0003700|GO:0006355
Vra2g0388 154 PANTHER BZIP TRANSCRIPTION FACTOR 1 152 - -
Vra2g0388 154 SUPERFAMILY Leucine zipper domain 31 83 IPR046347 GO:0003700|GO:0006355
Vra2g0388 154 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 152 - -
Vra2g0388 154 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 92 IPR004827 GO:0003700|GO:0006355
Vra2g0388 154 SMART brlzneu 27 91 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0388 Vra-Chr2 3014129 3015546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0388 25 154 bZIP Transcription Factor Family AT4G34590 57.143 1.39e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra2g0388 bZIP_1 1.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0388 K25786 - gmx:100101862 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0388 2 3014129 3015546 Vra2g0388 2 3014129 3015546 ECH