Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0384 ATGAGAAAGGGAGTAGTAGTAATAGTAGTAGGAAGCAACAGAGACATGAGAAGCTCAGCGTCTTACACGCTATTGCTGTTTCTTTTCGTATGGTTCCGCCTGGCCAAGTGTTCTTCTTTCAGTGACATGGATGCGCTGCTGAAGATGAAGGACTCCATGAAGGGACACAAAGCCAAAGAAGATGCGCTCAGCGACTGGAAGTTTTCCACCTCGCTTTCCGCACACTGTTCATTTTCTGGCGTCCAATGCGACCAAGACCTTCGAGTCGTTGCCATCAACGTCTCCTCCGTTCCACTCTTCGGCCACCTTCCGCCGGAGATTGGACAGTTTGACAAACTCCAAAACCTAACCATCTCGCAGGACAACCTCACCGGGGAGCTTCCCAAGGAGCTCGCTTCCCTCGCTTCCCTCAAGCTCCTCAACATCTCCCACAACAGCTTCTCCGGCAGTTTCCCCGGCCAAATCGTTCTGCCCATGACCCAACTCGAGGTCCTCGACGCCTACGACAACAACTTCACCGGACCCCTTCCGGAGGAATTCGTGAAACTGGAGAAACTCCGATACCTCAAGCTCGACGGAAATTACTTTTCCGGCAGCATACCGGAGAGATACTCGGAGTTTTTGTGCTTGGAGTTTTTGAGCTTAAGCACTAACAGTCTGTCGGGGAAGATTCCCAAGAGTTTGTCTCGGTTGAAGACGCTGAAGTATCTAAAACTCGGATACAACAACGCTTACGAAGGTGGGATCCCACCGGAGTTCGGAGCCATGAAATCACTTAAATACCTTGACCTTTCCAGCTGCAACCTCAGCGGAGAGATTCCACCGAGCCTGAGCAATTTAAAGAACCTTGACACGTTGTTCTTGCAAATGAACAACCTCACAGGAACCATTCCTTCGGAACTCTCTGCCATGGAGAGCCTCATGTCAATGGATCTCTCCTTCAACGGTCTCACCGGAGAGATTCCTGAGAGTTTCTCCCAGCTGAGAAACCTCACTCTGATGAACTTCTTCCACAACAAGCTGCGCGGTTCTGTTCCCCTCTTCGTCGGCGAGCTTCCGAATCTGGAAACGCTGCAGCTCTGGGAGAACAACCTGTCCTTCGTGCTGCCCCAGAATCTTGGCCAAAACGGGAAGTTCAAGTTCTTCGACGTCACGAGCAATCACTTCACCGGGTTCATCCCTCCGGGTCTGTGCAAGAGTGGGAGGTTACAAACCTTCGTCATCACCGATAACTTCTTCCACGGTCCTATTCCCAATGACATTGGAAACTGCAAGTCTCTCGTCAAGATCCGAGCCTCCAATAACTACCTTAGCGGCGCCATTCCGTCGGGAATTTTCAAACTGCCTTCCGTCAAAATAATCGAGCTCGCCAACAACCGTTTCGACGGCGAACTGCCTCCTGAGATTTCCGGCGATTCTCTCGGGATTCTCACGCTTTCCAACAACTTACTGACGGGGAGAATTCAACCGGCCTTGAAGAACTTGAGGGCACTGCAGACACTCTCACTCGACGCCAACGAGTTCGTTGGAGAAATCCCGGCGGAGGTTTTTGACTTACCAATACTGACCTCCGTCAACATAAGCGGCAACAATCTCACAGGAGCAATCCCCACGACGTTGATTCACTGCGTTTCACTCAACTTCGTTGACCTCAGTCGGAACATGCTGGAGGGGGAGATTCCCAAGGGCATAAAAAACCTAACGAGCTTGAGCGTTTTGAATGTTTCTCAAAACCTGATAACAGGACCAATCCCCGACGAGATTCGCTTCATGTCTAGCCTCACAACGCTGGATCTCTCCTACAACAATTTCAACGGCAAGCTCCCAACCGGCGGTCAGTTTTTGGCCTTCAGCGACAGGTCCTTCGCAGGGAACCCCAATCTCTGTTCCTCCCGCTCTTGCACCAGTTCCTCCATGTACCCAGACGACGCCTTCCAGAAAAGGCGAGGCCCATGGAGTTCGAAATCGACGAGGGTGATAATAAGCGTGATTGCACTAGCCACCGCGGCGCTGCTGGTGGCAGTGACAGTGTACATGATGCGAAGGAGGAAGCTGCTCCGGGCGATGACGTGGAAGCTGACGGCGTTCCAGCGGCTGAACTTGAAAGCGGAGGACGTGGTGGAGTGTCTGAAAGATGAGAACATAATAGGAAAAGGAGGGGCAGGGATCGTGTACCGGGGGTCGATGCCGAACGGAAGCGACGTGGCAATAAAGCGGTTGGTCGGTGCGGGTAGCGGGAGGAACGATTACGGGTTCAGGGCGGAGATAGAGACGCTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTCTGGGTTACGTGTCGAACAAGGAGACGAACTTGCTGCTGTACGAGTACATGCCGAATGGAAGCTTAGGGGAATGGCTGCATGGAGCGAAAGGAGGGCACTTAAAATGGGATATGAGGTTCAAGATTGCAGTTGAAGCTGCAAGAGGACTCTGTTACTTGCACCATGATTGTTCTCCTCTCATCATTCACAGAGACGTCAAATCCAACAATATATTGCTCGACGCCGACTTCGAGGCCCATGTCGCCGATTTCGGACTCGCCAAGTTCCTCCACGACCCCGGTGCCTCTCAGTCCATGTCCTCCATTGCCGGCTCCTACGGCTACATTGCTCCAGAGTATGCATACACGCTGAAAGTGGACGAGAAAAGCGATGTGTACAGTTTCGGGGTGGTGCTGTTGGAGCTGATAATAGGGAGGAAGCCGGTGGGGGAGTTTGGAGATGGAGTGGACATCGTTGGATGGGTGAACAAGACTAGAATGGAGATATCTCAGCCGTCGGATGCAGCGTTGGTGTTGGCAGTGGTGGATCCACGGCTGAGTGGGTATCCATTGACAAGTGTCATTTACATGTTCAACATTGCTATGATGTGTGTTAGGGAAATGGGCCCCGCCAGGCCCACCATGAGGGAAGTCGTTCATATGCTCACGAATCCTCCTCACTCCACCACTCACTCACACTCACAATCTCATTAA 3003 0.5208 MRKGVVVIVVGSNRDMRSSASYTLLLFLFVWFRLAKCSSFSDMDALLKMKDSMKGHKAKEDALSDWKFSTSLSAHCSFSGVQCDQDLRVVAINVSSVPLFGHLPPEIGQFDKLQNLTISQDNLTGELPKELASLASLKLLNISHNSFSGSFPGQIVLPMTQLEVLDAYDNNFTGPLPEEFVKLEKLRYLKLDGNYFSGSIPERYSEFLCLEFLSLSTNSLSGKIPKSLSRLKTLKYLKLGYNNAYEGGIPPEFGAMKSLKYLDLSSCNLSGEIPPSLSNLKNLDTLFLQMNNLTGTIPSELSAMESLMSMDLSFNGLTGEIPESFSQLRNLTLMNFFHNKLRGSVPLFVGELPNLETLQLWENNLSFVLPQNLGQNGKFKFFDVTSNHFTGFIPPGLCKSGRLQTFVITDNFFHGPIPNDIGNCKSLVKIRASNNYLSGAIPSGIFKLPSVKIIELANNRFDGELPPEISGDSLGILTLSNNLLTGRIQPALKNLRALQTLSLDANEFVGEIPAEVFDLPILTSVNISGNNLTGAIPTTLIHCVSLNFVDLSRNMLEGEIPKGIKNLTSLSVLNVSQNLITGPIPDEIRFMSSLTTLDLSYNNFNGKLPTGGQFLAFSDRSFAGNPNLCSSRSCTSSSMYPDDAFQKRRGPWSSKSTRVIISVIALATAALLVAVTVYMMRRRKLLRAMTWKLTAFQRLNLKAEDVVECLKDENIIGKGGAGIVYRGSMPNGSDVAIKRLVGAGSGRNDYGFRAEIETLGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLKWDMRFKIAVEAARGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLHDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRMEISQPSDAALVLAVVDPRLSGYPLTSVIYMFNIAMMCVREMGPARPTMREVVHMLTNPPHSTTHSHSQSH* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0384 1000 Pfam Leucine Rich repeat 592 606 IPR001611 GO:0005515
Vra2g0384 1000 Pfam Protein tyrosine and serine/threonine kinase 713 983 IPR001245 GO:0004672|GO:0006468
Vra2g0384 1000 Pfam Leucine rich repeat 497 556 IPR001611 GO:0005515
Vra2g0384 1000 Pfam Leucine rich repeat 282 341 IPR001611 GO:0005515
Vra2g0384 1000 SMART LRR_typ_2 352 376 IPR003591 -
Vra2g0384 1000 SMART LRR_typ_2 567 590 IPR003591 -
Vra2g0384 1000 SMART LRR_typ_2 495 519 IPR003591 -
Vra2g0384 1000 SMART LRR_typ_2 591 624 IPR003591 -
Vra2g0384 1000 SMART LRR_typ_2 280 304 IPR003591 -
Vra2g0384 1000 SMART LRR_typ_2 256 279 IPR003591 -
Vra2g0384 1000 SMART LRR_typ_2 448 472 IPR003591 -
Vra2g0384 1000 Gene3D Ribonuclease Inhibitor 158 244 IPR032675 -
Vra2g0384 1000 Pfam Leucine Rich Repeat 258 280 IPR001611 GO:0005515
Vra2g0384 1000 Gene3D Ribonuclease Inhibitor 41 157 IPR032675 -
Vra2g0384 1000 SUPERFAMILY Protein kinase-like (PK-like) 700 985 IPR011009 -
Vra2g0384 1000 Gene3D Phosphorylase Kinase; domain 1 676 786 - -
Vra2g0384 1000 SMART serkin_6 710 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0384 1000 Gene3D Ribonuclease Inhibitor 245 349 IPR032675 -
Vra2g0384 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672|GO:0006468
Vra2g0384 1000 Pfam Leucine rich repeat N-terminal domain 41 84 IPR013210 -
Vra2g0384 1000 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 20 992 - -
Vra2g0384 1000 SUPERFAMILY L domain-like 383 630 - -
Vra2g0384 1000 Gene3D Ribonuclease Inhibitor 353 638 IPR032675 -
Vra2g0384 1000 SUPERFAMILY RNI-like 92 414 - -
Vra2g0384 1000 PANTHER UNNAMED PRODUCT 20 992 - -
Vra2g0384 1000 ProSiteProfiles Protein kinase domain profile. 710 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0384 1000 Gene3D Transferase(Phosphotransferase) domain 1 787 999 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0384 Vra-Chr2 2968169 2972065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0384 37 994 Receptor kinase-like Gene Family AT1G75820 60.480 0.0 1191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra2g0384 PK_Tyr_Ser-Thr 1.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0384 K00924 - gmx:732625 1636.7