Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra2g0384 | ATGAGAAAGGGAGTAGTAGTAATAGTAGTAGGAAGCAACAGAGACATGAGAAGCTCAGCGTCTTACACGCTATTGCTGTTTCTTTTCGTATGGTTCCGCCTGGCCAAGTGTTCTTCTTTCAGTGACATGGATGCGCTGCTGAAGATGAAGGACTCCATGAAGGGACACAAAGCCAAAGAAGATGCGCTCAGCGACTGGAAGTTTTCCACCTCGCTTTCCGCACACTGTTCATTTTCTGGCGTCCAATGCGACCAAGACCTTCGAGTCGTTGCCATCAACGTCTCCTCCGTTCCACTCTTCGGCCACCTTCCGCCGGAGATTGGACAGTTTGACAAACTCCAAAACCTAACCATCTCGCAGGACAACCTCACCGGGGAGCTTCCCAAGGAGCTCGCTTCCCTCGCTTCCCTCAAGCTCCTCAACATCTCCCACAACAGCTTCTCCGGCAGTTTCCCCGGCCAAATCGTTCTGCCCATGACCCAACTCGAGGTCCTCGACGCCTACGACAACAACTTCACCGGACCCCTTCCGGAGGAATTCGTGAAACTGGAGAAACTCCGATACCTCAAGCTCGACGGAAATTACTTTTCCGGCAGCATACCGGAGAGATACTCGGAGTTTTTGTGCTTGGAGTTTTTGAGCTTAAGCACTAACAGTCTGTCGGGGAAGATTCCCAAGAGTTTGTCTCGGTTGAAGACGCTGAAGTATCTAAAACTCGGATACAACAACGCTTACGAAGGTGGGATCCCACCGGAGTTCGGAGCCATGAAATCACTTAAATACCTTGACCTTTCCAGCTGCAACCTCAGCGGAGAGATTCCACCGAGCCTGAGCAATTTAAAGAACCTTGACACGTTGTTCTTGCAAATGAACAACCTCACAGGAACCATTCCTTCGGAACTCTCTGCCATGGAGAGCCTCATGTCAATGGATCTCTCCTTCAACGGTCTCACCGGAGAGATTCCTGAGAGTTTCTCCCAGCTGAGAAACCTCACTCTGATGAACTTCTTCCACAACAAGCTGCGCGGTTCTGTTCCCCTCTTCGTCGGCGAGCTTCCGAATCTGGAAACGCTGCAGCTCTGGGAGAACAACCTGTCCTTCGTGCTGCCCCAGAATCTTGGCCAAAACGGGAAGTTCAAGTTCTTCGACGTCACGAGCAATCACTTCACCGGGTTCATCCCTCCGGGTCTGTGCAAGAGTGGGAGGTTACAAACCTTCGTCATCACCGATAACTTCTTCCACGGTCCTATTCCCAATGACATTGGAAACTGCAAGTCTCTCGTCAAGATCCGAGCCTCCAATAACTACCTTAGCGGCGCCATTCCGTCGGGAATTTTCAAACTGCCTTCCGTCAAAATAATCGAGCTCGCCAACAACCGTTTCGACGGCGAACTGCCTCCTGAGATTTCCGGCGATTCTCTCGGGATTCTCACGCTTTCCAACAACTTACTGACGGGGAGAATTCAACCGGCCTTGAAGAACTTGAGGGCACTGCAGACACTCTCACTCGACGCCAACGAGTTCGTTGGAGAAATCCCGGCGGAGGTTTTTGACTTACCAATACTGACCTCCGTCAACATAAGCGGCAACAATCTCACAGGAGCAATCCCCACGACGTTGATTCACTGCGTTTCACTCAACTTCGTTGACCTCAGTCGGAACATGCTGGAGGGGGAGATTCCCAAGGGCATAAAAAACCTAACGAGCTTGAGCGTTTTGAATGTTTCTCAAAACCTGATAACAGGACCAATCCCCGACGAGATTCGCTTCATGTCTAGCCTCACAACGCTGGATCTCTCCTACAACAATTTCAACGGCAAGCTCCCAACCGGCGGTCAGTTTTTGGCCTTCAGCGACAGGTCCTTCGCAGGGAACCCCAATCTCTGTTCCTCCCGCTCTTGCACCAGTTCCTCCATGTACCCAGACGACGCCTTCCAGAAAAGGCGAGGCCCATGGAGTTCGAAATCGACGAGGGTGATAATAAGCGTGATTGCACTAGCCACCGCGGCGCTGCTGGTGGCAGTGACAGTGTACATGATGCGAAGGAGGAAGCTGCTCCGGGCGATGACGTGGAAGCTGACGGCGTTCCAGCGGCTGAACTTGAAAGCGGAGGACGTGGTGGAGTGTCTGAAAGATGAGAACATAATAGGAAAAGGAGGGGCAGGGATCGTGTACCGGGGGTCGATGCCGAACGGAAGCGACGTGGCAATAAAGCGGTTGGTCGGTGCGGGTAGCGGGAGGAACGATTACGGGTTCAGGGCGGAGATAGAGACGCTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTCTGGGTTACGTGTCGAACAAGGAGACGAACTTGCTGCTGTACGAGTACATGCCGAATGGAAGCTTAGGGGAATGGCTGCATGGAGCGAAAGGAGGGCACTTAAAATGGGATATGAGGTTCAAGATTGCAGTTGAAGCTGCAAGAGGACTCTGTTACTTGCACCATGATTGTTCTCCTCTCATCATTCACAGAGACGTCAAATCCAACAATATATTGCTCGACGCCGACTTCGAGGCCCATGTCGCCGATTTCGGACTCGCCAAGTTCCTCCACGACCCCGGTGCCTCTCAGTCCATGTCCTCCATTGCCGGCTCCTACGGCTACATTGCTCCAGAGTATGCATACACGCTGAAAGTGGACGAGAAAAGCGATGTGTACAGTTTCGGGGTGGTGCTGTTGGAGCTGATAATAGGGAGGAAGCCGGTGGGGGAGTTTGGAGATGGAGTGGACATCGTTGGATGGGTGAACAAGACTAGAATGGAGATATCTCAGCCGTCGGATGCAGCGTTGGTGTTGGCAGTGGTGGATCCACGGCTGAGTGGGTATCCATTGACAAGTGTCATTTACATGTTCAACATTGCTATGATGTGTGTTAGGGAAATGGGCCCCGCCAGGCCCACCATGAGGGAAGTCGTTCATATGCTCACGAATCCTCCTCACTCCACCACTCACTCACACTCACAATCTCATTAA | 3003 | 0.5208 | MRKGVVVIVVGSNRDMRSSASYTLLLFLFVWFRLAKCSSFSDMDALLKMKDSMKGHKAKEDALSDWKFSTSLSAHCSFSGVQCDQDLRVVAINVSSVPLFGHLPPEIGQFDKLQNLTISQDNLTGELPKELASLASLKLLNISHNSFSGSFPGQIVLPMTQLEVLDAYDNNFTGPLPEEFVKLEKLRYLKLDGNYFSGSIPERYSEFLCLEFLSLSTNSLSGKIPKSLSRLKTLKYLKLGYNNAYEGGIPPEFGAMKSLKYLDLSSCNLSGEIPPSLSNLKNLDTLFLQMNNLTGTIPSELSAMESLMSMDLSFNGLTGEIPESFSQLRNLTLMNFFHNKLRGSVPLFVGELPNLETLQLWENNLSFVLPQNLGQNGKFKFFDVTSNHFTGFIPPGLCKSGRLQTFVITDNFFHGPIPNDIGNCKSLVKIRASNNYLSGAIPSGIFKLPSVKIIELANNRFDGELPPEISGDSLGILTLSNNLLTGRIQPALKNLRALQTLSLDANEFVGEIPAEVFDLPILTSVNISGNNLTGAIPTTLIHCVSLNFVDLSRNMLEGEIPKGIKNLTSLSVLNVSQNLITGPIPDEIRFMSSLTTLDLSYNNFNGKLPTGGQFLAFSDRSFAGNPNLCSSRSCTSSSMYPDDAFQKRRGPWSSKSTRVIISVIALATAALLVAVTVYMMRRRKLLRAMTWKLTAFQRLNLKAEDVVECLKDENIIGKGGAGIVYRGSMPNGSDVAIKRLVGAGSGRNDYGFRAEIETLGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLKWDMRFKIAVEAARGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLHDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRMEISQPSDAALVLAVVDPRLSGYPLTSVIYMFNIAMMCVREMGPARPTMREVVHMLTNPPHSTTHSHSQSH* | 1001 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra2g0384 | 1000 | Pfam | Leucine Rich repeat | 592 | 606 | IPR001611 | GO:0005515 | |
Vra2g0384 | 1000 | Pfam | Protein tyrosine and serine/threonine kinase | 713 | 983 | IPR001245 | GO:0004672|GO:0006468 | |
Vra2g0384 | 1000 | Pfam | Leucine rich repeat | 497 | 556 | IPR001611 | GO:0005515 | |
Vra2g0384 | 1000 | Pfam | Leucine rich repeat | 282 | 341 | IPR001611 | GO:0005515 | |
Vra2g0384 | 1000 | SMART | LRR_typ_2 | 352 | 376 | IPR003591 | - | |
Vra2g0384 | 1000 | SMART | LRR_typ_2 | 567 | 590 | IPR003591 | - | |
Vra2g0384 | 1000 | SMART | LRR_typ_2 | 495 | 519 | IPR003591 | - | |
Vra2g0384 | 1000 | SMART | LRR_typ_2 | 591 | 624 | IPR003591 | - | |
Vra2g0384 | 1000 | SMART | LRR_typ_2 | 280 | 304 | IPR003591 | - | |
Vra2g0384 | 1000 | SMART | LRR_typ_2 | 256 | 279 | IPR003591 | - | |
Vra2g0384 | 1000 | SMART | LRR_typ_2 | 448 | 472 | IPR003591 | - | |
Vra2g0384 | 1000 | Gene3D | Ribonuclease Inhibitor | 158 | 244 | IPR032675 | - | |
Vra2g0384 | 1000 | Pfam | Leucine Rich Repeat | 258 | 280 | IPR001611 | GO:0005515 | |
Vra2g0384 | 1000 | Gene3D | Ribonuclease Inhibitor | 41 | 157 | IPR032675 | - | |
Vra2g0384 | 1000 | SUPERFAMILY | Protein kinase-like (PK-like) | 700 | 985 | IPR011009 | - | |
Vra2g0384 | 1000 | Gene3D | Phosphorylase Kinase; domain 1 | 676 | 786 | - | - | |
Vra2g0384 | 1000 | SMART | serkin_6 | 710 | 960 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vra2g0384 | 1000 | Gene3D | Ribonuclease Inhibitor | 245 | 349 | IPR032675 | - | |
Vra2g0384 | 1000 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 831 | 843 | IPR008271 | GO:0004672|GO:0006468 | |
Vra2g0384 | 1000 | Pfam | Leucine rich repeat N-terminal domain | 41 | 84 | IPR013210 | - | |
Vra2g0384 | 1000 | PANTHER | RECEPTOR PROTEIN KINASE CLAVATA1 | 20 | 992 | - | - | |
Vra2g0384 | 1000 | SUPERFAMILY | L domain-like | 383 | 630 | - | - | |
Vra2g0384 | 1000 | Gene3D | Ribonuclease Inhibitor | 353 | 638 | IPR032675 | - | |
Vra2g0384 | 1000 | SUPERFAMILY | RNI-like | 92 | 414 | - | - | |
Vra2g0384 | 1000 | PANTHER | UNNAMED PRODUCT | 20 | 992 | - | - | |
Vra2g0384 | 1000 | ProSiteProfiles | Protein kinase domain profile. | 710 | 993 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vra2g0384 | 1000 | Gene3D | Transferase(Phosphotransferase) domain 1 | 787 | 999 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra2g0384 | Vra-Chr2 | 2968169 | 2972065 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra2g0384 | 37 | 994 | Receptor kinase-like Gene Family | AT1G75820 | 60.480 | 0.0 | 1191 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vra2g0384 | PK_Tyr_Ser-Thr | 1.9e-40 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra2g0384 | K00924 | - | gmx:732625 | 1636.7 |