Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0378 ATGGGAGAGGTAGCGCGCAGAGGATGTTGTCCTCCGATGGATCTGTTCCGTTCGGAGCCGATGCAACTGGTTCAGCTCATCATCCCAATCGAATCCGCTCACCGCACTGTCTCCTACCTCGGCGACCTTGGCCTTCTTCAGTTCAAAGATCTCAATTCAGATAAGAGTCCTTTTCAGCGAACATATGCAACTCAGATAAAAAGATGTGGAGAGATGGCTCGGAGACTGCGTTTCTTCAAGGAGCAAATGTTGAAGGCAGGTGTTTCACCAAAATATTCCACAACACCAGTTGATGTGAACATTGATGACCTTGAGGTAAAACTTACAGAAATTGAGTCAGAGTTAGTTGAGATGAACGCAAATGGTGAGAAGTTGCAACGGTCATACAATGAGCTTGTGGAGTATAAGCTCGTTTTACAGAAGGCTGGTGAGTTTTTCCACTCAGCTCAAAGCCGTGCCATAGAGCAGCAGAGAGAATTTGAATCCCGTCATCTGGGGGATGATTCTATGGAAACACCTTTATTACAGGACCAAGAATTGTTAGGTGATTCGTCAAAGCAAGTTAAGTTGGGGTTTTTAGCAGGTCTTGTTCCCAGGGAAAAGTCCATGGTATTTGAGAGAATTTTATTTCGTGCTACTAGAGGAAATGTATTTTTAAGGCAGGCTACTGTTGAGGATCCTGTCACAGACCCTGTTTCTGGAGAAAAGACTGAGAAAAATGTTTTTGTGATCTTCTATGCTGGAGAAAAAGCAAAAGCCAAGATTCTCAAAATATGTGAAGCCTTTGGTGCTAATCGTTACCCTTTTGCTGAGGAACTTGGAAAACAAGCACAAATGATCACAGAGGTTTCTGGAAGACTTTTGGAATTGAAGACCACTATAGATGCTGGACTACATCACCGGGATCACTTGCTAAATACTATTGGGGCTCAATTTGAGCAATGGGATGTTCTGGTGAGGAAGGAGAAATCTATTCATCATACCCTGAACATGCTGAGCCTTGATGTGACGAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCTGTCTTTGCAAATAAGCAGATCCAGGATGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAATGCCATTTTCCAAGTTCTGCATACCAGGGAGTTGCCGCCTACCTTTTTCCGCACAAATAAATTTACTTCTTCTTTTCAAGGAATCATTGATTCATATGGGGTTGCTAAGTATCAGGAGGCAAATCCGACTGTGTATACTGTAGTTACCTTTCCGTTTCTTTTTGCTGTTATGTTTGGCGATTGGGGACATGGAATATGTTTACTACTTGCAGCTCTATATTTCATAATCAGGGAGAAGAAACTATCTAGTCAGAAGCTTGATGACATCACGGAGATGACTTTTGGAGGTCGTTATGTTATTTTGCTGATGGCGCTGTTCTCAATCTACACTGGCTTTATCTATAACGAGTTCTTTTCTGTTCCATTTCCACTCTTTGCCCCCTCTGCTTATGATTGTCGTGACCTCTCTTGCAGGGACGCTACAACAGTGGGCTTGATAAAAGTGCGTGAAACTTATCCTTTCGGAGTTGATCCTGTATGGCATGGAACACGAAGTGAACTACCATTTCTGAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTGATGAGCTATTGCAATGCCATATTCTTTAGAAACAGGGTGAATGTGTGGTTCCAGTTCATTCCCCAGATGATATTTCTCAACAGTCTATTTGGCTATCTAGCCCTTCTTATTATTGTGAAGTGGTGTACTGGTTCTCAAGCTGATTTGTACCATATTTTGATCTACATGTTCCTTAGCCCGACTGATGATTTGGGTGAGAACCAACTCTTTGTTGGTCAGAAGAATTTGCAGCTTGTGCTTTTGCTTCTGGCATTTATCTCTGTCCCCTGGATGCTGTTGCCAAAACCTTTTATCTTAAAGAAGCAACATGAAGCTAGGCACGGGGCTGAATCCTATACACCACTTGAAAGCACAGACGAGAGCTTGCAAGCGGAGTCAAACCACGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTGCATCAACTTATACATACCATTGAATTTGTGCTTGGAGCAGTGTCTAATACGGCTTCTTACCTCCGTCTATGGGCCCTTAGTCTTGCTCATTCAGAATTATCAAGTGTATTCTACGAGAAGGTTCTGCTAATGGCATGGGGGTACAATAATGTGATAATCCTGATAGTGGGTCTCATTGTTTTCATCTTCGCTACAGTCGGAGTGTTACTTGTCATGGAAACACTTAGTGCGTTCTTGCATGCGTTACGACTTCACTGGGTGGAGTTTCAAAACAAGTTTTACGAGGGCGATGGTTACAAGTTCCACCCTTTCTCGTTCTCCTTACTGGATGATGAGGAATAA 2457 0.4278 MGEVARRGCCPPMDLFRSEPMQLVQLIIPIESAHRTVSYLGDLGLLQFKDLNSDKSPFQRTYATQIKRCGEMARRLRFFKEQMLKAGVSPKYSTTPVDVNIDDLEVKLTEIESELVEMNANGEKLQRSYNELVEYKLVLQKAGEFFHSAQSRAIEQQREFESRHLGDDSMETPLLQDQELLGDSSKQVKLGFLAGLVPREKSMVFERILFRATRGNVFLRQATVEDPVTDPVSGEKTEKNVFVIFYAGEKAKAKILKICEAFGANRYPFAEELGKQAQMITEVSGRLLELKTTIDAGLHHRDHLLNTIGAQFEQWDVLVRKEKSIHHTLNMLSLDVTKKCLVAEGWSPVFANKQIQDALQRAALDSNSQVNAIFQVLHTRELPPTFFRTNKFTSSFQGIIDSYGVAKYQEANPTVYTVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITEMTFGGRYVILLMALFSIYTGFIYNEFFSVPFPLFAPSAYDCRDLSCRDATTVGLIKVRETYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIVMSYCNAIFFRNRVNVWFQFIPQMIFLNSLFGYLALLIIVKWCTGSQADLYHILIYMFLSPTDDLGENQLFVGQKNLQLVLLLLAFISVPWMLLPKPFILKKQHEARHGAESYTPLESTDESLQAESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLMAWGYNNVIILIVGLIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFSLLDDEE* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0378 818 Pfam V-type ATPase 116kDa subunit family 39 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vra2g0378 818 PIRSF ATP6V0A1 11 818 IPR026028 GO:0000220|GO:0046961
Vra2g0378 818 Coils Coil 101 128 - -
Vra2g0378 818 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 5 818 - -
Vra2g0378 818 PANTHER VACUOLAR PROTON ATPASES 5 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0378 Vra-Chr2 2932946 2943277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0378 13 818 Primary Pumps ATPases(2) AT4G39080 78.589 0.0 1322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0378 K02154 - gmx:100810062 1510.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0378 2 2932946 2943277 Vra2g0378 2 2932946 2943277 ECH