Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0362 ATGGAAGTTGCGGCGGCAGAAGCGCTGAAACCGAGCTTGCGGACAGAGTTCATCTTCCCGCAAGCAATCTGCGACGAGATTTTTTGTTTCAACGCCAACAACATTGTTGTCGGCGAAGATTTCTCCGTCGACGACCTTCTTGACTTTTCCAACGGCGAATTCCAGCTTGGAAAGGATTTCGATGTGTACGAGGAAGAGGAAGACGAGGAAAAAGACAGCACCTCTGGTTCCTCGCAGGAACGGTCCGAAGACGACAGCAATTCCAATTCCACCGGCGCTGGCGGCGTCGGCGACTCGGACTCCGTCTTCGCAGGGGAATTATCAGTTCCTGCGGATGATGTGGCGGACCTGGAATGGGTTTCTCATTTTGTAGACGATTCTCTCCCTGAGCTTTCTCTTTTGTACCCTGTCCCTTCGGAACAAACAAGGGTATGGGCCGAACCAAAACCTAGACCGGGACGGGCCCAAAACGGTTCGACGATTCCCAGAAGGCCGAGAACCGGAAAGAATAGGAAGCCCAACGCTCGCGTGTGGTCTTTTACGGTGTCGCCGCCGTCTCTGTGTTTTTCGGTGTTGGCTGGCTCCGTTGAGTTTGGCGAGCCGACGGCTAAAAAGCAGAAGAAAAAGGCCGAGGCCCAAATTGGGGCCCAGTTTCAGCGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACCGGTCCACTGGGGCCCAAAACACTCTGTAACGCTTGCGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCGGCCTGTAGCCCAACTTTCTCTGGTGATATTCACTCAAATAGCCATCGTAAGGTGTTGGAGATGAGGCGTAGAAAGGAGATCAGCGAACCGCAAACCGGTTCAGACCGGCCTCAACTGGTCCCAAGCTTTTGA 918 0.5447 MEVAAAEALKPSLRTEFIFPQAICDEIFCFNANNIVVGEDFSVDDLLDFSNGEFQLGKDFDVYEEEEDEEKDSTSGSSQERSEDDSNSNSTGAGGVGDSDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVPSEQTRVWAEPKPRPGRAQNGSTIPRRPRTGKNRKPNARVWSFTVSPPSLCFSVLAGSVEFGEPTAKKQKKKAEAQIGAQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEISEPQTGSDRPQLVPSF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0362 305 MobiDBLite consensus disorder prediction 80 96 - -
Vra2g0362 305 PANTHER GATA TRANSCRIPTION FACTOR 1 303 - -
Vra2g0362 305 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Vra2g0362 305 SMART GATA_3 216 270 IPR000679 GO:0006355|GO:0043565
Vra2g0362 305 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Vra2g0362 305 MobiDBLite consensus disorder prediction 144 173 - -
Vra2g0362 305 CDD ZnF_GATA 221 278 IPR000679 GO:0006355|GO:0043565
Vra2g0362 305 MobiDBLite consensus disorder prediction 60 102 - -
Vra2g0362 305 Gene3D - 215 291 IPR013088 GO:0006355|GO:0008270
Vra2g0362 305 PANTHER GATA TRANSCRIPTION FACTOR 1 303 - -
Vra2g0362 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 277 - -
Vra2g0362 305 PIRSF Txn_fac_GATA_plant 4 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vra2g0362 305 MobiDBLite consensus disorder prediction 284 305 - -
Vra2g0362 305 ProSiteProfiles GATA-type zinc finger domain profile. 220 252 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0362 Vra-Chr2 2774983 2776654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0362 8 305 C2C2-Gata Transcription Factor Family AT5G66320 39.650 6.69e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra2g0362 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0362 - - gmx:100776188 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0362 2 2774983 2776654 Vra2g0362 2 2774983 2776654 ECH
Vra2g0362 2 2774983 2776654 Vra5g1799 5 24027000 24028799 ECH