Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0350 ATGGACGACGGCGAGCTCGATTTCTCGACGCAGGAAGTGTTTTCGAGTCCGAACATGGGGGAGCTTCCGAGCAGTGGTTCCATGGACAGTTTCTTCGACGAGCTTCTCAAGGACACGCATGCCTGCACGCACACCCACACATGCAACCCTCCGGGGCCCGATTTTTCTCACACTCATACGTGCTACCACGTGCACACCAAAATCGTGCCGGCACCTGATGAGGACCAGGTGGCCACCGACGACACGGCGGAGTCCGCGGAGAAGAAGTCGAAGAAGCGGCCCCTTGGGAACAAAGAAGCGGTTCGAAAGTACCGTGAGAAGAAGAAGGCTCGAGCGGCCTCGCTGGAGGACGAGGTGGTGAAATTGAGGGCTCTCAATCAGCATTTGATGAAGAAGTTGCAGAACCAGGCTGCTTTGGAAGCTGAAATCGCGAGGCTGAAGTGCTTGCTGGTGGACATTAGGGGCAGGATTGAAGGGGAAATTGGTTCCTTTCCGTATCAGAAATCGCCGAATGCGAACCCTCCGGTGGTTAACCTGCCTGGTTCTTATGTGATGAACCCTTGCAACATGCAGTGTGATGATAGGGTGTATTGCCTTCATCCGGGAGCGGATGGGAGAATCATGGAGAACGTATCATCGTTAAATGGGGAAGAGTTTGGTGGTTGTGAATTTGAGAACCTGCAGTGTCTAGCAAACCAGAATTTGGGGCTCAAGGAGCTGCGTGCATGTGGAGTTGGGCAGGCAGGGTCTAATGTAAATTCTTCTGCGTCAAAAAGAAAAGGGGGATCTCGTGCAGCAACAGCTGGTTGA 810 0.5333 MDDGELDFSTQEVFSSPNMGELPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAPDEDQVATDDTAESAEKKSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQNQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKSPNANPPVVNLPGSYVMNPCNMQCDDRVYCLHPGADGRIMENVSSLNGEEFGGCEFENLQCLANQNLGLKELRACGVGQAGSNVNSSASKRKGGSRAATAG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0350 269 Gene3D - 76 153 - -
Vra2g0350 269 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Vra2g0350 269 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Vra2g0350 269 Coils Coil 98 142 - -
Vra2g0350 269 MobiDBLite consensus disorder prediction 81 99 - -
Vra2g0350 269 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 241 - -
Vra2g0350 269 MobiDBLite consensus disorder prediction 72 99 - -
Vra2g0350 269 PANTHER BASIC LEUCINE ZIPPER 23 1 241 - -
Vra2g0350 269 MobiDBLite consensus disorder prediction 248 269 - -
Vra2g0350 269 MobiDBLite consensus disorder prediction 1 22 - -
Vra2g0350 269 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
Vra2g0350 269 SUPERFAMILY Leucine zipper domain 89 136 IPR046347 GO:0003700|GO:0006355
Vra2g0350 269 CDD bZIP 91 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0350 Vra-Chr2 2684648 2687499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0350 1 268 bZIP Transcription Factor Family AT2G16770 63.469 9.96e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra2g0350 bZIP_2 7.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0350 K25785 - gmx:780549 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0350 2 2684648 2687499 Vra2g0350 2 2684648 2687499 ECH