Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0349 ATGGAAGTTGAAAAAAGGTTTGTTTTGGTTGGTATTAGAATTGATGGCCATAGTAGACAGCTTCTCGACTGGGCACTCGTCAAGGTTGCTGAACCAGGGGATTCTGTTGTAGCAGTTCATGTTGTTAAAAATCCAGATCATGTTTGGAAAAGCAATACTCTGATAGATGACTATTTAGAAGTTTATGAAGGGCTATGTGATGTTAAGAAGTTAGATCTCACTGGTCAAATCTTCTGTGGATGCTCCGTCCGAAACATTCTAGTTAGAGAAGCAAAAAAGCATGATGCTCTGGCTCTAGTGGTAGGGGGTCGAGCTGGCTTAGCTAAATATTGCGCCAAACGAGTACCAGCCACCACCAATGTTCTAGCCATCCAAGGCTCAAGGATTGTATATAGGAGTTGCACCGACGAACAACAACCAGGTACTCTTATAAAGGACCCAAGGCCTAGCTTAAGAACCATAGGAAAAAACTCAAGTGACAGATTAAACCAGTCTACATTTGGTGACTCCACCCTGGAGATTGAGAAACCAGCAACCAAAAATTCCTTAGATTTGAAGGAAGAAATATTTAAAGGATTAGCAAAATGTAAGACAAGGTCAATATCCATGTGTGCTGGTGATTCGGCTAAGCAGAAGCTTGGGTGGCCTCTACTCCGAGGAGCCAATTCAGGAACCTCACAAACCCATCATGCAAGGGACATGTCAGTAGTACAATGGGTAATGACTTTACCGGATCGTTCTCCATCTAAAAGTCCCTGGTCTTCTTCCTCTGAGGATAATCCATTTGAAAGGAGCATCAGCGATATTGATGATGAGAGCTCCAAATTTTCTTCAGCTCCATCTGTTGAGCTACCAAATGGCCTAGAGGAAATGCAACGAGTAAATTCAATCGACTGCAAGTGGTTCAGCCTTGAACTTCTGCAGTCTTGCACTAGACAATTTTCTTCAGAAAACTTGGTTGGGAAAGGAGGGAGCAATTGTGTGTACAAGGGAGTCCTCCCTGATGGAAAGCCAGTGGCAGTTAAAGTATTGCAGACATCAAAAGAAGCCTGGAAAGAGTTTGCCCTTGAGATGGAAATAACATCCTCATCGAGGCACAAAAACATTGCCCCTCTACTTGGGATTTGTACAGAGAACAATACTTTAATCTCCGTTTATGATTATTTGCCCCAGGGCACCTTAGAGGAAAATCTGCATGGAAAGAGCAAATTGTCATGGGAGGTGAGATTTAATGTGGCAGTTGGGATAGCTGAAGCCCTGGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACACAGAGATGTCAAGTCTTCTAACATTCTTCTTTCCCTGGGGTTTGAGCCTCAGTTATCTGATTTCGGACTTGCAGTATGGGGACCAACAAATTCATCCTTTTTGACACAAGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAATGTCAGCGACAAGATAGATGTTTATGCATTTGGTGTAGTTCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCAGAAGCTTGCAAAGGACAGGAGAGCTTGGTCGTGTGGGCAAAACCAATGATAGATAGTGGGGATATTAAAGGCTTATTGGACCCAGATTTAGAAGGGAAATTTGATGAGGTCCAATTGCAAAGAATGGTTATGGCAGCATCTTTATGCATCCAACGGGCTGCTCGACTTCGTCCTAAACTGAACCAGATACTGAAGATCCTAAAAGGAGATGAGAAAGTTGAATATTTGCTGAACTCCCTTGGGAACAACGAGGATGATTTAGAAAATGGAGAAAACATTGATGATGAAGTGTATCCAAGTTCAAGTGCTGAGTTACACCTGAGTCTTGCTTTACTTGGTGTGGACGATGACAAAGCATCACAAACTAGCACTGAGCTCAGCTATAGTGAGCACTTGAAAGAATGGAGCAGGTCATCAAGTTTCAATTAG 1968 0.4253 MEVEKRFVLVGIRIDGHSRQLLDWALVKVAEPGDSVVAVHVVKNPDHVWKSNTLIDDYLEVYEGLCDVKKLDLTGQIFCGCSVRNILVREAKKHDALALVVGGRAGLAKYCAKRVPATTNVLAIQGSRIVYRSCTDEQQPGTLIKDPRPSLRTIGKNSSDRLNQSTFGDSTLEIEKPATKNSLDLKEEIFKGLAKCKTRSISMCAGDSAKQKLGWPLLRGANSGTSQTHHARDMSVVQWVMTLPDRSPSKSPWSSSSEDNPFERSISDIDDESSKFSSAPSVELPNGLEEMQRVNSIDCKWFSLELLQSCTRQFSSENLVGKGGSNCVYKGVLPDGKPVAVKVLQTSKEAWKEFALEMEITSSSRHKNIAPLLGICTENNTLISVYDYLPQGTLEENLHGKSKLSWEVRFNVAVGIAEALDYLHREALKPVIHRDVKSSNILLSLGFEPQLSDFGLAVWGPTNSSFLTQDVVGTFGYLAPEYFMYGNVSDKIDVYAFGVVLLELISGREPISSEACKGQESLVVWAKPMIDSGDIKGLLDPDLEGKFDEVQLQRMVMAASLCIQRAARLRPKLNQILKILKGDEKVEYLLNSLGNNEDDLENGENIDDEVYPSSSAELHLSLALLGVDDDKASQTSTELSYSEHLKEWSRSSSFN* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0349 655 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 104 - -
Vra2g0349 655 PANTHER OS08G0249100 PROTEIN 3 635 - -
Vra2g0349 655 SUPERFAMILY Protein kinase-like (PK-like) 295 580 IPR011009 -
Vra2g0349 655 MobiDBLite consensus disorder prediction 246 281 - -
Vra2g0349 655 Pfam Protein kinase domain 316 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0349 655 Gene3D Phosphorylase Kinase; domain 1 281 388 - -
Vra2g0349 655 MobiDBLite consensus disorder prediction 246 262 - -
Vra2g0349 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Vra2g0349 655 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 3 635 - -
Vra2g0349 655 Gene3D HUPs 2 115 IPR014729 -
Vra2g0349 655 SMART serkin_6 314 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0349 655 Gene3D Transferase(Phosphotransferase) domain 1 389 597 - -
Vra2g0349 655 ProSiteProfiles Protein kinase domain profile. 314 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0349 655 CDD USP_Like 8 109 - -
Vra2g0349 655 MobiDBLite consensus disorder prediction 141 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0349 Vra-Chr2 2679233 2683547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0349 302 580 Trihelix Transcription Factor Family AT1G70460 43.357 3.23e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra2g0349 Pkinase 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0349 - - gmx:100789189 975.311