Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0342 ATGGGAAGATCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGACAGACTCATATCTTACATTCGAGCTCACGGCGAGGGCTGCTGGCGGTCACTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGTCGTCTACGCTGGATCAACTACCTCCGTCCCGACCTCAAGCGTGGCAACTTCACCGAAGAAGAGGATGAACTCATCATCAAACTCCACAGCCTCCTCGGGAACAAGTGGTCTTTGATAGCTGGAAGATTGCCGGGGAGAACGGACAATGAAATAAAGAACTATTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCACAGACCTCTCAACGAAGCAGCTTCTTCTGCAACAGTTGTAACAGTTGCAACTGCCAGTAATATATCTTTCGGTAAACAAGAACAAGAGACAAGTTCGAGTAACGGAAGCGTGGTTAAAGGGTCCATCTTAGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCACCAACAACATCATCAACAACAACAACCTCAGAAGAATCTTTGCTTCGTTTGCAGTTTGGGTTTGCACAACAGCAAGGATTGCAGCTGCAACGTGGCCAACGCCGTCGCTGCCAACAACACCGCTCCTCCTGCTTCTGCCGCCGCTTATGATTTCTTGGGCTTGAAAACCAACGGTGTTTGGGATTGCACCAGCTTGGAAATGAAATGA 765 0.4967 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASSATVVTVATASNISFGKQEQETSSSNGSVVKGSILERCPDLNLELTISPPRHQQHHQQQQPQKNLCFVCSLGLHNSKDCSCNVANAVAANNTAPPASAAAYDFLGLKTNGVWDCTSLEMK* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0342 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra2g0342 254 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 220 - -
Vra2g0342 254 CDD SANT 69 112 IPR001005 -
Vra2g0342 254 CDD SANT 16 61 IPR001005 -
Vra2g0342 254 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vra2g0342 254 SMART sant 66 114 IPR001005 -
Vra2g0342 254 SMART sant 13 63 IPR001005 -
Vra2g0342 254 Gene3D - 68 137 - -
Vra2g0342 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra2g0342 254 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra2g0342 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra2g0342 254 Gene3D - 14 66 - -
Vra2g0342 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra2g0342 254 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 220 - -
Vra2g0342 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0342 Vra-Chr2 2623671 2625165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0342 1 254 MYB Transcription Factor Family AT4G38620 60.000 2.30e-108 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g0342 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0342 K09422 - gmx:780553 445.662