Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0335 ATGGGCACCGCAACCGCCTTTTCGCCTCCCGCCGTTTCAACCACCACTAAATGGCTGGGCTTCGTGGCCGCCGTCTGGATTCAGTGCATCTCCGGCAACAACTACACCTTCTCCAATTACTCCGATGCGCTCAAATCCCTTATGCATCTCACGCAGGTGCAACTCAACAACCTCTCCGTCGCTAAAGACATCGGAAAAGCCTTTGGGCTTCTGGCGGGCCTCGCCTCTGACCGCTTTCCGACATGGGCCATTCTCCTGATAGGCTCCGTCGAAGGCCTAATTGGATACGGAGTCCAATGGCTCGTTGTGAGCCAGAAAATCCAGCCCCTTCCCTATTGGCAGATGTGTGTGTTTCTGTGCATGGGAGGGAACAGCACGACGTGGATGAACACTGCCGTTTTGGTAACGTGCATACGCAACTTCCGTACAAACAGAGGACCCGTTTCGGGGATTTTGAAAGGCTTTGTAGGGTTGAGCACTGCGATATTCACCACGCTCTGTTCTGCGCTTTTCGCCGACGACCCTGCTTACTTCCTCGTCATGCTCTCTCTCGTTCCCCTCGTCGTTTGTCTCACCGGTATCTTTTTCCTCCGAGAGCTTCCTCCCACCGTTGCCGCTGCCGGAAACGCCGAGGAGGTCAAGTATTTCGGCGTCTTCAACGTCGTTGCCGTCCTCGTCGCGCTCTTCCTCTTGGTCTATGGCTTCGTCCCCAGCCCTGGCGTCCTGGTGTCGCGAGTGTTCGTCGCCGTTCTGCTGGTTATGCTGGCTTCGCCGTTGGGGATTCCAGTATACACGTACTTCAAGGGACGACTCGGAGCAGGGAATGACGTGGAGGGGCAGAGAGCGAATGAACCGTTGCTTGGTGGTGGGGAAAAGGAAAACGAAAGCGTGGCGGCGGTTGAAGAGGAGGCTTTGGTGGAGAAGAGAGCGCCGATGGTGGGTGAAGAGCACACGATAACGGAGGTGCTGAAGAGCGTGGATTTTTGGATCTTGTTCGTGTCGTTTCTCTGCGGGGTTGGAACCGGTTTGGCTGTGATGAACAATATGGGTCAAATCGGGTTGGCTCTCGGGTACCCAGATGTTTCACTTTTTGTCTCGTTGACCAGTATTTTCGGATTCTTTGGACGGATCATCTCGGGTACCGTTTCCGAGTTCACAATCAAGAGAGCAGCAACACCAAGACCTCTGTGGAATGCAGCATCTCAGCTTCTAATGGCTGTTGGTTATATACTGATGGCAATGGCTGTGCCAGGTTCTCTGTACATTGGGTCTATTTTGGTTGGCATATGTTATGGAGTTAGGCTTGCAATCACAGTTCCGACAGCCTCGGAGTTATTTGGTCTGAAATACTATGGTCTGATCTACAACATTCTGATCCTTAACCTTCCTCTGGGCTCTTTCCTTTTCTCTGGTTTGCTTGCTGGCATACTGTATGATATGGAAGCAACGACAACAGAGGGAGGAGGCAACACCTGTGTTGGAGGTCACTGTTACAGGCTAGTCTTTATTGTCATGACTGGAGCATGTATTGTTGGCTTCTTCTTAGACATTCTCCTGTCGTTCAGAACCAAAACTGTTTACACAAAGATTTCCATCAGCAAGAAACCCAAGAAATCCTTATCAGCATCAAGCAGCCGTTGA 1641 0.5186 MGTATAFSPPAVSTTTKWLGFVAAVWIQCISGNNYTFSNYSDALKSLMHLTQVQLNNLSVAKDIGKAFGLLAGLASDRFPTWAILLIGSVEGLIGYGVQWLVVSQKIQPLPYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRTNRGPVSGILKGFVGLSTAIFTTLCSALFADDPAYFLVMLSLVPLVVCLTGIFFLRELPPTVAAAGNAEEVKYFGVFNVVAVLVALFLLVYGFVPSPGVLVSRVFVAVLLVMLASPLGIPVYTYFKGRLGAGNDVEGQRANEPLLGGGEKENESVAAVEEEALVEKRAPMVGEEHTITEVLKSVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYPDVSLFVSLTSIFGFFGRIISGTVSEFTIKRAATPRPLWNAASQLLMAVGYILMAMAVPGSLYIGSILVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDMEATTTEGGGNTCVGGHCYRLVFIVMTGACIVGFFLDILLSFRTKTVYTKISISKKPKKSLSASSSR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0335 546 SUPERFAMILY MFS general substrate transporter 32 524 IPR036259 -
Vra2g0335 546 Gene3D MFS general substrate transporter like domains 295 543 IPR036259 -
Vra2g0335 546 Gene3D MFS general substrate transporter like domains 13 208 IPR036259 -
Vra2g0335 546 Pfam Nodulin-like 17 263 IPR010658 -
Vra2g0335 546 CDD MFS_Mch1p_like 17 512 - -
Vra2g0335 546 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 12 540 - -
Vra2g0335 546 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 12 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0335 Vra-Chr2 2558069 2561540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0335 17 539 Nodulin-like Gene Family AT4G34950 68.248 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0335 - - gmx:100800237 869.766