Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0323 ATGGAGAGATCCTATGTTTTTGTTTTTCTCTGTGTCTCTGTGCTTTGTCTCTTCCTGTCCGAACCCACCAGAGCAGAAGACGATTCCCAGCCACTACTCGCTCTCAAATCCTCCATTGACGTTCTCCACAAGCTCCCATGGCGGCAAGGAACCGACGTGTGCACATGGAAAGGGGTCAAAGACTGCTTCAACGGAAGAGTCAGAAAGCTCGTTCTGGAACACTCCAACCTAACCGGTTCTCTAGATGCCAAGATCTTGAACCGTTTGGACCAGCTCCGAGTCCTCAGCTTCAAAGGAAACTCACTCTCCGGCCAAGTCCCTGACCTCTCCGCCCTGATCAACCTCAAATCGATTTTCCTTAACGACAACAATTTCTCCGGCGAGTTCCCCTCCTCGGTCGCGCTGCTCCACCGCGTCAAAGTCATTGTCCTGTCGCAAAACCACATCTCCGGCGACATTCCAGCGTCGCTTCTGAATCTCCGGCGACTCTACATCCTCTACCTGGAAGACAACGCGTTCACGGGAAGCATCCCGGCTTTCAACCAAACCAGCCTCAGGTATTTGAATGTCTCCAACAATCGACTCTCCGGCGAGATTCCGGAGACCGCCGCACTGATCCGGTTCAATGCCTCGTCGTTTTCAGGCAACCCGGGGCTCTGCGGGGAGAACATCCTCCAACCGTGCAAAAACGGCAGCGCTCCGTCGGCGCCGCCGATAAGCCCCAGCTATCCGCTAATCCCGGGAGGCACCGCGGCGGCGTCGAAGCGGGCGTCATATAACCGTACCAAACTGATAAAGATAATTGGAGGGTGCGTTGGTGGGTTTATTTTCATACTGTTGTGCATGGTTGTGGTGTGGGCGATTTGCAGGAAGCGGAAGACGAGGGTGGGTTCCGGAACGAGGAGCAAGGGCGGTGCTGACGTGGCAGAGGGGGAGGCTGGTGCGGCGGGGAGTGCAGGAGGCGGCGGCGGCGGCGGCGGCGGCGAGGGCGGGGACAGTGGTAAACAAGGGGGTTTTGCATGGGAAGGTGAGGGTCTAGGGAAACTGGTGTTCTGCGGAGGAGGTGATCGCGAGATGAGTTATAGTTTGGAAGATTTGCTGAAAGCATCGGCGGAGACTTTGGGGAGGGGTATTATCGGAAGTACATATAAAGCAGTTATGGAATCAGGGTTCATCGTTACTGTTAAGAGGTTGAAGGATGCAAGATACCCTGGTTTGGAAGAATTCAGAGCTCACATTCATGTTCTTGGAAGGCTCACTCACCCTAACCTGGTCCCACTCAGGGCCTATTTTCAGGCTAAAGAAGAACGTCTTCTCGTTTATGATTACTTCCCCAATGGCAGCCTCTTCTCCCTTATTCACGGATCAAAGACATCCGGCGGGGGAAAGCCTCTTCACTGGACATCCTGCCTTAAGATTGCCGAAGATCTAGCAACAGGCCTGCTCTATATCCACCAGAACCCCGGCATGACACATGGAAACCTAAAATCTTCTAATGTGTTGCTTGGTTCTGATTTTGAGTCATGTCTTACTGATTATGGTCTCACTGTTTTCCTAAATCCTGACTCAATGGACGAGCCCAGTGCCACATCTTTATTCTACAGAGCACCTGAATGCCGCAACTTTCAAAGGTCACAAACTCAACCAGCTGATGTATACAGCTTTGGGGTCCTTGTTCTAGAGCTTTTAACTGGCAAAACACCCTTCCAAGACCTTGTTCAGACGTATGGTTCAGACATACCTAGGTGGGTCCGGTCAGTGCGCGAAGAAGAGACAGAGTCCGGTGATGATCCTGCCTCAGGCAATGAAGCATCAGAAGAGAAGCTTCAGGCTCTTCTGAACATTGCCATGGCATGTGTTTCACTGGTGCCAGAAAACAGGCCTACAATGAGAGAGGTTTTAAAGATGATAAGAGATGCAAGAGGGGAGGCGCATGTCTCATCTAACAGTAGTGATCACTCTCCTGGAAGATGGTCAGATACTGTTCAAAGCTTTCCAAGGGAAGAACACCAGAGCATATGA 2022 0.5198 MERSYVFVFLCVSVLCLFLSEPTRAEDDSQPLLALKSSIDVLHKLPWRQGTDVCTWKGVKDCFNGRVRKLVLEHSNLTGSLDAKILNRLDQLRVLSFKGNSLSGQVPDLSALINLKSIFLNDNNFSGEFPSSVALLHRVKVIVLSQNHISGDIPASLLNLRRLYILYLEDNAFTGSIPAFNQTSLRYLNVSNNRLSGEIPETAALIRFNASSFSGNPGLCGENILQPCKNGSAPSAPPISPSYPLIPGGTAAASKRASYNRTKLIKIIGGCVGGFIFILLCMVVVWAICRKRKTRVGSGTRSKGGADVAEGEAGAAGSAGGGGGGGGGEGGDSGKQGGFAWEGEGLGKLVFCGGGDREMSYSLEDLLKASAETLGRGIIGSTYKAVMESGFIVTVKRLKDARYPGLEEFRAHIHVLGRLTHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGMTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDSMDEPSATSLFYRAPECRNFQRSQTQPADVYSFGVLVLELLTGKTPFQDLVQTYGSDIPRWVRSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLVPENRPTMREVLKMIRDARGEAHVSSNSSDHSPGRWSDTVQSFPREEHQSI* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0323 673 MobiDBLite consensus disorder prediction 644 673 - -
Vra2g0323 673 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Vra2g0323 673 Pfam Leucine rich repeat N-terminal domain 26 59 IPR013210 -
Vra2g0323 673 SUPERFAMILY Protein kinase-like (PK-like) 372 648 IPR011009 -
Vra2g0323 673 Gene3D Transferase(Phosphotransferase) domain 1 444 660 - -
Vra2g0323 673 MobiDBLite consensus disorder prediction 296 334 - -
Vra2g0323 673 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 27 661 - -
Vra2g0323 673 ProSiteProfiles Protein kinase domain profile. 368 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0323 673 Pfam Protein kinase domain 371 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0323 673 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 27 661 - -
Vra2g0323 673 SUPERFAMILY L domain-like 32 223 - -
Vra2g0323 673 Gene3D Ribonuclease Inhibitor 181 232 IPR032675 -
Vra2g0323 673 MobiDBLite consensus disorder prediction 647 673 - -
Vra2g0323 673 Gene3D Phosphorylase Kinase; domain 1 355 443 - -
Vra2g0323 673 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0323 Vra-Chr2 2470129 2475833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0323 14 673 Receptor kinase-like Gene Family AT1G60630 61.319 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra2g0323 Pkinase 1.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0323 - - gmx:100809866 1100.12