Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0319 ATGGCATCGGCCTTCGTCAAGCTCGACGATTCCCCTATGTTCCAGAAGCAGTTATTTTCTCTTGAAGAAACAACTGATGAGTTACGGGATCGATGCCAGAAGCTATATAGTGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATAACCTTTGCTGATTCATTAGAAGCATTTGGCGGTGGCCAAGATGACCCTGTTAGTGTATCAATAGGAGGTCCTGTCATAACTAAGTTTATTACCACATTGCGTGAGCTAGCTTCTTTCAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGACAGAGTTTATGAACATTGATTTGCAAGATACAAAGGATTCTCGTCGTCGTTATGACAAAGCTGTCCAATCTTATGATCAGTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCACAAGATATTGTAGCTGAATTAGAAGAGGATCTACAAAATTCCAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCACTCATGAATGTTGAAGCGAAAAAGAAGTATGAGTTCTTGGAGTCGATTAGTGCAATAATGGATGCTCATTTGAGATACTTTAAGCTGGGTTATGATTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGTTAACATATGCACAACAATCTAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGTTAGAGAATATCCGAGCTTCTAGCAATTTTACTGAAACCATGTCAGGTTCTGAAGGCATCCATGTTGTAGGCTTGAATTCGTACAGGAGTTTAGATTCAGGGATGCTGTCTGCAACCAAAGGGGAGCCTTGCTTACAGCTTCAAACAGTTAAACAAGGTTATCTGTTAAAACGGTCATCGGGTTCGCGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAAGGAGTTTATATTATTATAGAGTCAAGGGTGTCAAACCCACGGGCTCTCAGTCATATAATTATGTTCGTTCTATTGAACAAACTAGTGGAATGTTTGGTAGATTCCGTTTAAAACACAACAGGGCTGCATCAATGAATGATGACATTTTAGGTTGTTACACTATTGATCTATGCACATCTACTATAAAGATGGATGCCGAAGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACGTTAACACTTCAGGCCGAAAATGAAGCTGATAGGATGGACTGGGTTAACAAAATTACTGGAGCTATAACATTACTTTTTAATTCACAGTTTCTTCAAGAGCCTCAATATGGTGGAGCGAATTCAGAGAGTAAAAACTTAGCAACTGGTGCTTCTTCGTCATGTCATTCGGAGGATGGTCAGGAATCATTGAGTAATGACTTATATTCCACGGAAGTGGGTAGTGTCTCAAAGATTTTAAGGGGAATTCCAGGGAATGATAAATGTGCCGAGTGTAGTGCTCCTGAACCAGAATGGGCATCTCTAAACCTTGGCATATTGTTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGAAAATACCATTTTGGAGTTATTTGATAACTTAGGTAATGCCTACTGTAATTCTATATGGGAGGGCTTGCTTCTGCTGGATCATGAAAGGGTAGGTGAATTAAGTGTGCCTATTAAACCTTGTTCAACAGATGCCTTCCAAATCAAAGAGAAATACATCCAAGCAAAGATTTCTCAAAAGAATTCTGTCATTTATGAGTTCATTGAGTACGTAGAGAAATCATTAATGATCCGAGAAGAGGATATACCCAACAATCCTTCAGTTTCCGTAAGAATTTGGCAAGCAGTTCAGGCTGTAAATGTAAGAGAAGTGTATCGGCTTGTTGTTACATCAGAATCAAATATGATAAACACAAAATATGGTGATGAGGTTCCCCATGCTGCTGAGGCGGAAGGGCAGCAACATGATCCCGAAGCCTGTCTGAAGGTTGAAGAGACTATTGAGACTGAGAGGTGTTTCCGTGGATGGTCATTATTACATTTGGCATGTCATACTGACAGTACACTGATGGTCGAGTTGTTGCTCCAATTTGGTGCTGATGTAAATATGTGTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTACAAGTGGGAAAAATAATTTGGCAAAGTTTCTATTAAGAAGGGGTGCAAGGCCGTCAATTAAAGATGCTGGAGGGCTCACTATACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCATGCTTGCTGAATGCTAG 2376 0.399 MASAFVKLDDSPMFQKQLFSLEETTDELRDRCQKLYSGCKKFMTALGEAYNGEITFADSLEAFGGGQDDPVSVSIGGPVITKFITTLRELASFKELLRSQVEHVLIDRLTEFMNIDLQDTKDSRRRYDKAVQSYDQSREKFVSLKKNTPQDIVAELEEDLQNSKSTFEKSRFNLVNSLMNVEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIRASSNFTETMSGSEGIHVVGLNSYRSLDSGMLSATKGEPCLQLQTVKQGYLLKRSSGSRGDWKRRFFVLDNQRSLYYYRVKGVKPTGSQSYNYVRSIEQTSGMFGRFRLKHNRAASMNDDILGCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTLTLQAENEADRMDWVNKITGAITLLFNSQFLQEPQYGGANSESKNLATGASSSCHSEDGQESLSNDLYSTEVGSVSKILRGIPGNDKCAECSAPEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTILELFDNLGNAYCNSIWEGLLLLDHERVGELSVPIKPCSTDAFQIKEKYIQAKISQKNSVIYEFIEYVEKSLMIREEDIPNNPSVSVRIWQAVQAVNVREVYRLVVTSESNMINTKYGDEVPHAAEAEGQQHDPEACLKVEETIETERCFRGWSLLHLACHTDSTLMVELLLQFGADVNMCDYHGRTPLHHCITSGKNNLAKFLLRRGARPSIKDAGGLTILERAMEMGAITDEELFIMLAEC* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0319 791 CDD ArfGap 487 601 - -
Vra2g0319 791 CDD PH_ACAP 302 437 - -
Vra2g0319 791 Gene3D - 632 789 IPR036770 -
Vra2g0319 791 Pfam PH domain 301 432 IPR001849 -
Vra2g0319 791 Pfam Ankyrin repeats (3 copies) 695 763 IPR002110 GO:0005515
Vra2g0319 791 SUPERFAMILY ArfGap/RecO-like zinc finger 485 606 IPR037278 -
Vra2g0319 791 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 788 - -
Vra2g0319 791 ProSiteProfiles ARF GTPase-activating proteins domain profile. 483 605 IPR001164 GO:0005096
Vra2g0319 791 Pfam BAR domain of APPL family 8 230 - -
Vra2g0319 791 Gene3D Arf GTPase activating protein 472 617 IPR038508 -
Vra2g0319 791 PRINTS HIV Rev interacting protein signature 495 514 IPR001164 GO:0005096
Vra2g0319 791 PRINTS HIV Rev interacting protein signature 514 531 IPR001164 GO:0005096
Vra2g0319 791 PRINTS HIV Rev interacting protein signature 537 558 IPR001164 GO:0005096
Vra2g0319 791 ProSiteProfiles PH domain profile. 299 433 IPR001849 -
Vra2g0319 791 SMART ANK_2a 732 761 IPR002110 GO:0005515
Vra2g0319 791 SMART ANK_2a 699 728 IPR002110 GO:0005515
Vra2g0319 791 SUPERFAMILY BAR/IMD domain-like 8 322 IPR027267 -
Vra2g0319 791 Gene3D - 297 445 IPR011993 -
Vra2g0319 791 CDD BAR_SFC_plant 16 217 IPR035670 -
Vra2g0319 791 ProSiteProfiles Ankyrin repeat region circular profile. 732 763 - -
Vra2g0319 791 ProSiteProfiles Ankyrin repeat region circular profile. 699 730 - -
Vra2g0319 791 Pfam Putative GTPase activating protein for Arf 487 603 IPR001164 GO:0005096
Vra2g0319 791 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Vra2g0319 791 ProSiteProfiles BAR domain profile. 3 227 IPR004148 GO:0005515|GO:0005737
Vra2g0319 791 SMART arf_gap_3 483 615 IPR001164 GO:0005096
Vra2g0319 791 ProSiteProfiles Ankyrin repeat profile. 732 764 IPR002110 GO:0005515
Vra2g0319 791 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Vra2g0319 791 SMART PH_update 300 435 IPR001849 -
Vra2g0319 791 MobiDBLite consensus disorder prediction 451 472 - -
Vra2g0319 791 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Vra2g0319 791 Coils Coil 229 249 - -
Vra2g0319 791 SUPERFAMILY Ankyrin repeat 662 785 IPR036770 -
Vra2g0319 791 PANTHER CENTAURIN/ARF 3 788 IPR045258 GO:0005096
Vra2g0319 791 SUPERFAMILY PH domain-like 300 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0319 Vra-Chr2 2432980 2446567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0319 493 541 C2H2 Transcription Factor Family AT3G07940 67.347 3.94e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0319 K12489 - gmx:100796740 1348.18