Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0315 ATGGTAGTGATCATGCAACAGCAGCAGCAACAACAGCAGCAGCAGAATCCTTCTGCACTGGTGCCACACCTAAAAAATCCCCAATCCTCCACCTCCACCGTCGCCGCCGCCACCACAACCCCCGCCGCCACTTCCATTAGGTCGCCTACCTCGCAGTCGCCGCTCTCCGTCGTCGCTCCCCTCCGCCAACCCCCGCTTACCTCGCATCCCGTGCCAGTTACGGCGGTGGAGTCTGCTTTGACGGCGGTACCGACGTGTCCGCTGGTGAGAGTCCGCCTCTCGGACATTGCCCCCTATGACGGGGCACCGGCGGGGTCTTATCTGAGAGCAATGGAGGCGCTGTGTGGGTCTCTGCTGCGGCACAATGCAGCGTTGATCGAATTGGGGAGCGAGGACACTGCTCTGATGCGATGCGGCTTGGAAGGTGCACGGTTGTTTTTCAGAAGCAGGGCCCAACTTGGTGTTGGAAAGGGTAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTGGAGGATTGGGATTATTCTCCCCCCTGCATGGCTGATATTTATCGATGCATGGGAAAGGTGTCTCGATCTGGCTTGAGTGCCATTGCAAGATATTTACGTCTTAGAAGCGACGTTTTTAACCATTTGCTTGATGATTCTCCATTGCCTGCTAATGAGGTGTCATCTTCAGTTCTTGTTGCAACATACTCAAATTCTTCTTTGCAAAATGGAAGAGGTGCCATTGGAGGTGGTAAGCCTACCATGAATGGTGAAGTTGAAAAGGGATTGTTGACGTTGATTTCTTCTGACACTCCTGGTCTTCAGATATGTGACCCCAGTGGGCGTTGGTATCTGGCAGACAGTGGTTCTGGGCCTGGAGATCTTTTACTGATAACAGGCAAGGCACTTAGTTATGCTACTGCTGGGCTACGTCCTGCAGCATCATATAGAGCTTCTCCTGATTATTTTCTGAGTCCTAATGGTGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCCCCAATAGCAGCAGCTGGCCATATTATTCCCCAAAGTTATGTTCGAATTTCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAATTGACAGGCAGCAGATGTGATAATGCCGATGTTGCTGCTCAAAACAGTATGAACAAGGAGCCATCATTAAGAAGTGTTCTATCAGATCCTTTATCTGGCACATTCCTTGAAGATGCCATGTTTGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTGAGGAGAGTTATTGAAACATCCAGATGTACTCTCTGCAATACAGAAATTGAAACTGGTTCTTTGATCCCCAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGAACGGAGGTTATTTCGTAATGCTGCTCTTCGAAAGCGGCGGAAAGAAATGGGTGACCAAATGGATTCAATGAGAAGAGTGAATAGGGAAAATGGAGATTATAGTGCTCCTGATGGACTTCAGCGGGGGGTGCAATATCCATTTTCGGTAAACGAGAAAGTTATCATTAAGGGTAACAGAAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTGTGATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGAAACTGGAGAGAATGTCCGCCTGCAGTACCGTTCTCTTAGGAAGCTCTTAACAGCGGACCAGTGTCTCCCACAACCAATTCAAAATAGCAGCTCTTAA 1758 0.4852 MVVIMQQQQQQQQQQNPSALVPHLKNPQSSTSTVAAATTTPAATSIRSPTSQSPLSVVAPLRQPPLTSHPVPVTAVESALTAVPTCPLVRVRLSDIAPYDGAPAGSYLRAMEALCGSLLRHNAALIELGSEDTALMRCGLEGARLFFRSRAQLGVGKGSRGVYMYRAGRALEDWDYSPPCMADIYRCMGKVSRSGLSAIARYLRLRSDVFNHLLDDSPLPANEVSSSVLVATYSNSSLQNGRGAIGGGKPTMNGEVEKGLLTLISSDTPGLQICDPSGRWYLADSGSGPGDLLLITGKALSYATAGLRPAASYRASPDYFLSPNGGGRTSLAYRLMPQGNAILDCSPIAAAGHIIPQSYVRISVSQFMDDLAAEELTGSRCDNADVAAQNSMNKEPSLRSVLSDPLSGTFLEDAMFVSCGHSFGGLMLRRVIETSRCTLCNTEIETGSLIPNLALRAAAAAVKHEDERRLFRNAALRKRRKEMGDQMDSMRRVNRENGDYSAPDGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIETGENVRLQYRSLRKLLTADQCLPQPIQNSSS* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0315 585 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 82 582 - -
Vra2g0315 585 SUPERFAMILY RING/U-box 398 464 - -
Vra2g0315 585 MobiDBLite consensus disorder prediction 1 58 - -
Vra2g0315 585 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 82 582 - -
Vra2g0315 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 467 IPR013083 -
Vra2g0315 585 SUPERFAMILY Clavaminate synthase-like 180 347 - -
Vra2g0315 585 MobiDBLite consensus disorder prediction 1 61 - -
Vra2g0315 585 Gene3D - 170 377 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0315 Vra-Chr2 2404551 2414505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0315 398 568 Plant U-box Gene Family AT5G05230 40.936 4.05e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0315 - - gmx:100807199 996.497