Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0312 ATGGCTCCCAAGCGTGGTGGAAAAGCCCCGGTTCTTGCCTCTAAGAAGAAGCCTGAGAAGGTTACTAACCCGCTTTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGAGCGTTGCCGCCGAAGAGAGACTTGACTCGGTTCGTCAAATGGCCCAAGACCGTTCAGATTCAGAGGAAGAAAAGGATTCTGAAGCAGAGGTTGAAGGTTCCTCCAGCTTTGAACCAGTTTACGAAGACACTCGACAAAAACCTAGCAACAAGTCTGTTTAAGATCCTGTTGAAGTACAGGCCAGAGGATAAAGCAGAAAAGAAGGAGAGACTTTTGAAAAGGGCACAGGCAGAGGCTGAGGGAAAAACTATCGAGGCCAAGAAGCCTATTAATGTGAAATATGGTCTTAACCATGTTACCTACCTCATTGAGCAGAACAAAGCACAGCTTGTTGTTATTGCTCACGATGTCGACCCAATTGAACTAGTTGTGTGGCTTCCAGCATTGTGCAGGAAAATGGAAATTCCCTACTGCATTGTGAAAGGAAAGGCTCGCTTGGGAACGGTCGTCCACAAGAAAACAGCATCTGTTTTGTGCTTGACAACTGTAAAGAATGAAGATAAATTGGAGTTCAGCAGAGTCTTGGAGGCCATCAAGGCTAACTTCAATGACAAGTACGACGAATACAGAAAGAAATGGGGTGGTGGAATCATGGGATCCAAATCTCAAGCCAAAACCCGGGCGAAGGAAAAGCTTCTGGCCAAGGAAGCTGCTCAGAGAATGTCTTAG 780 0.4667 MAPKRGGKAPVLASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTIEAKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0312 259 MobiDBLite consensus disorder prediction 1 24 - -
Vra2g0312 259 ProSitePatterns Ribosomal protein L7Ae signature. 167 184 IPR004037 GO:0042254|GO:1990904
Vra2g0312 259 Gene3D - 51 234 IPR029064 -
Vra2g0312 259 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Vra2g0312 259 PRINTS Ribosomal protein L7A/RS6 family signature 148 161 IPR018492 -
Vra2g0312 259 PRINTS Ribosomal protein L7A/RS6 family signature 164 174 IPR018492 -
Vra2g0312 259 PRINTS Ribosomal protein L7A/RS6 family signature 174 188 IPR018492 -
Vra2g0312 259 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 257 - -
Vra2g0312 259 Coils Coil 102 122 - -
Vra2g0312 259 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Vra2g0312 259 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Vra2g0312 259 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Vra2g0312 259 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Vra2g0312 259 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Vra2g0312 259 PRINTS Ribosomal protein L7A family signature 186 210 IPR001921 -
Vra2g0312 259 PRINTS Ribosomal protein L7A family signature 218 238 IPR001921 -
Vra2g0312 259 SUPERFAMILY L30e-like 89 230 IPR029064 -
Vra2g0312 259 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 117 206 IPR004038 -
Vra2g0312 259 PANTHER BNAA03G47020D PROTEIN 2 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0312 Vra-Chr2 2385000 2386950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0312 1 259 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.714 7.67e-168 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0312 K02936 - gmx:100792324 486.108