Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0300 ATGTACTTGAGGAGAATACAATGCAGGAGAGATCGATTATGGGCTTTGGTGTTGCAGCCATCAAAATACTTCTTTAGGCCAAGATTCTCTGATCATCAATACTTTCAATCTTTGTCCCTAAAGACTGCTGTGGAAGAGTATGCTTCACATGGCAGGATCATCAGAGAATGTCTTTTAGGTTCATATTCATGTAAACATACTTCATCTACAATTACTTTTGCTGCTCGGGACAAAAGGCCTAGTTTATGTCATAACAGTACTCAGTTACGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACAAGTACATGTTAATGATGGAACCAACTTTGATAAAAGGCAAAATCAACAAGAGAAGTTTGGGAAAGAGGTTGAGTATTGGAATGCACATGCACGACTTGGAGAACAGGAACAAGAGGAATGGCTTAATAATGAGAAGCTAACTATAGAAAATAAAAGGAGAGAATCACCATTTTTGACAAGGAGGGATAAGTTTAAAAATGAGTTCACAAGAAGAATTATTCCTTGGGAAAAAATAAATATTTCCTGGGACACATTTCCTTATCATATTCATGAAAATACAAAAAATCTTCTTGTGGAATGTGCTGCTTCCCATTTGAGACATGATAAGCTAGCTTCAACTTATGGTACTCGGCTCTCATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTGTATCGTGAGAGATTGGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTCTTTTAGTGCTCGATAATAGCATCCTTGCTCCTTATGACATTGATGATGATTTATCATCGGAGTACGAGTCTGATGATGATCATGCAGAGTCTGGGGAGGAGGGTTCTCTCGAATCAGAGAATGATGATGATAATGAAGCCAGCAATGAAGAAGAGTGGGCTAGCAGTACAGAGGCAAAGTCAGATGCAAGTGACAATGAAGATGCAGTAGCAGCAGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCTGTTCTTAGGAAACTTGTCCCTTACAATGTAGAGGAATTTGAGAAGATTGTGGCTGGAGAATCTGAGAGTTCCGAATCCTCCAAGTCTAATTCTAATGATACCAAATCTTCTGATAAGTCTGGATGCCAGCTAAAGAAAGGTGACCGTGTGAGGTACACTGGGCCATCTGTTCAAGTTACAGACGAGGATAGGGTTATACTGGGGAAGATACCAACATCTGATGGTCCAACTAATGCTTATACTATTATACATGGCAGACCTTTAACTAATGGTCAGAGAGGAGAGGTATATGAGGTCAATGGCGATCGAGTTGCAGTCATCTTGGATATTAATGAAGACAAGGTCAACGAGGGTGAGGTGGAGAACCCCAGTGATGATCATGCCAAACCCCCAATTTATTGGATTCATGTTAAAGACATCGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATTGCTGTGGAGGCTTTATGTGAGGTTTTGCGTAGAAAACAGCCTCTTATTGTCTATTTTCCTGACAGTTCACATTGGTTACATAAATCAGTTCCTAAGTCAAACCGAAATGAGTTTTTTCATAAGGTTGAGGAGATGTTTGACCAGTTATCTGGTCCTATAATATTGATTTGTGGGCAAAATAAAGTTCAGTCAGGATCAAAGGAGAAAGAACAATTTACAATGATACTACCAAGCTTGGGACGTGTGGCTAAGTTGCCTCTTTATCTGAAGCATTGGACTGAGGGAATTAAAGGGGACAAGACATCAGAAGATGACGAAATTAGCAAGCTCTTTTCTAATATTCTGAGTATACATCCACCCAAGGATGAAAATCAGCTGGCAACATTCAAGAAACAACTTGAAGAAGATAAAAAAATCGTGACTTCACGTAGTAATTTGAGTATACTACGGAAGGTTCTAGAAGAACATCAGCTATCATGCATTGACCTTTTACATTTAAATACTGATGGCATCGTTTTGACAAAGCTCAAAGCAGAAAAAGTAGTAGGCTGGGCAAAAAATCACTACTTGTCGTCATGCTTGANTCCTTCTGTTAAAGGAGAAAGATTGTNNCTACCTCGTGAAAGTCTTGAAATTGCAGTCTCAAGATTGACAAGCCAGGAAACAATGTCACGGAAGTCTTCTCAGAGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCATCTGTAGTACCTCCTGGTGAAATAGGGGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAAAAGGCACTTCATGAACTCGTAATTCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGAGGAAATCTTTTACGGCCCTGTAAAGGAATATTACTTTTTGGTCCTCCTGGCACTGGTAAGACCCTTCTGGCTAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAACTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTAGAGGTGGTGCTTCTGAGCATGAGGCCACTAGAAGAATGAGGAATGAATTCATGGCAGCCTGGGATGGATTGAGGTCAAAAGAAAACCAACGAATCCTTATTCTTGGTGCAACAAACCGGCCATTTGATCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCCGATGCTGAAAATCGGATGAAGATTTTAAGCATCTTTCTAGCACAAGAAAATTTGGATTCTGAATTTCAGTTAGACAAACTTGCTCACTTGACTGATGGATACTCGGGAAGCGATTTGAAGAACCTCTGTATTGCTGCAGCGTATAGGCCTGTTCAAGAGCTCTTAGAGAATGAAAAGAAGAAAGCCAGTAATGATGGTACAACTTCAATACTAAGGCCTCTCAATTTGGAAGATTTTGTTCAGTCAAAAACCAAGGTGGGTCCATCAGTTGCGCATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTATGGAGAAGGTGGTAACAGGACAAAATCACCATTTGGATTTGGGAGCTGA 3132 0.4023 MYLRRIQCRRDRLWALVLQPSKYFFRPRFSDHQYFQSLSLKTAVEEYASHGRIIRECLLGSYSCKHTSSTITFAARDKRPSLCHNSTQLRAYSSESDGRNASEDKQVHVNDGTNFDKRQNQQEKFGKEVEYWNAHARLGEQEQEEWLNNEKLTIENKRRESPFLTRRDKFKNEFTRRIIPWEKINISWDTFPYHIHENTKNLLVECAASHLRHDKLASTYGTRLSSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDNSILAPYDIDDDLSSEYESDDDHAESGEEGSLESENDDDNEASNEEEWASSTEAKSDASDNEDAVAAAEAHLKKVKAAVLRKLVPYNVEEFEKIVAGESESSESSKSNSNDTKSSDKSGCQLKKGDRVRYTGPSVQVTDEDRVILGKIPTSDGPTNAYTIIHGRPLTNGQRGEVYEVNGDRVAVILDINEDKVNEGEVENPSDDHAKPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLRRKQPLIVYFPDSSHWLHKSVPKSNRNEFFHKVEEMFDQLSGPIILICGQNKVQSGSKEKEQFTMILPSLGRVAKLPLYLKHWTEGIKGDKTSEDDEISKLFSNILSIHPPKDENQLATFKKQLEEDKKIVTSRSNLSILRKVLEEHQLSCIDLLHLNTDGIVLTKLKAEKVVGWAKNHYLSSCLXPSVKGERLXLPRESLEIAVSRLTSQETMSRKSSQSLKNLAKDEFESNFISSVVPPGEIGVKFDDVGALEDVKKALHELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGASEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILSIFLAQENLDSEFQLDKLAHLTDGYSGSDLKNLCIAAAYRPVQELLENEKKKASNDGTTSILRPLNLEDFVQSKTKVGPSVAHDATSMNELRKWNEMYGEGGNRTKSPFGFGS* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0300 1043 Pfam ATPase family associated with various cellular activities (AAA) 789 919 IPR003959 GO:0005524|GO:0016887
Vra2g0300 1043 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1041 - -
Vra2g0300 1043 Gene3D - 921 1007 - -
Vra2g0300 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 747 969 IPR027417 -
Vra2g0300 1043 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 1041 - -
Vra2g0300 1043 MobiDBLite consensus disorder prediction 363 378 - -
Vra2g0300 1043 MobiDBLite consensus disorder prediction 93 120 - -
Vra2g0300 1043 MobiDBLite consensus disorder prediction 273 308 - -
Vra2g0300 1043 Gene3D - 748 1025 IPR027417 -
Vra2g0300 1043 SMART AAA_5 785 922 IPR003593 -
Vra2g0300 1043 MobiDBLite consensus disorder prediction 97 120 - -
Vra2g0300 1043 Pfam AAA+ lid domain 944 977 IPR041569 -
Vra2g0300 1043 MobiDBLite consensus disorder prediction 363 393 - -
Vra2g0300 1043 CDD AAA 787 920 - -
Vra2g0300 1043 MobiDBLite consensus disorder prediction 310 325 - -
Vra2g0300 1043 MobiDBLite consensus disorder prediction 272 325 - -
Vra2g0300 1043 ProSitePatterns AAA-protein family signature. 892 911 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0300 Vra-Chr2 2258382 2277823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0300 748 980 Calmodulin-binding Proteins AT3G56690 39.407 2.09e-41 163