Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0299 ATGGGCAAGTCTAGCAAGAAATCAGCTGTCAAGGTTGATGCCGCACCAGCTGTTGTTCCGTCATCAAAATCCGCCAAGAAGGGAGGGAAGAGACAAGCTGAAGAAGAAAGTGAGAAGCAAGTGATTGCAAAAAAACAGAAGATAGAGGAGGTTGCTCAAAAACAAAAAAAGGAAGCAAAGCTGCAGAAGAAGAAGGAAAGCAGTTCTGATGATTCTTCATCTGATTCTGAAGATGAGAAACCTGCTGTGAAACCTGCTGCTCTTTCAAAAAAGATACCCACCAAAAATGGTGCCGTAAAAGCCCCTGCAAAGAAAGGAAAGCCAGTTTCCAGTTCTTCTGAATCATCTGAAGATGATTCCTCAGAATCTGAGGATGAGAAACCTGTGCCAAAAGCTGCTGTGCCTTCAAAAAAGGCTCCTGCTAAAAATGGTGTCCCAGCAAAGAAAGGCAAGCCCGCTAGCAGCTCCAGTTCTTCGGAGGATTCTGAAGATGACTCCTCTGAAGACGAGAAACCAGCTGCCAAGAATGGCTCTGTAACTGCCTCTGCAAAGAATGTCAAGCCAGCTGCAGCTGCAAGCTCTTCTGATTTATCTGAGGATTCCTCTGACGAGGATGATGTTCCAAAAACTAAGGTGGTCCCTGCTGCAGCAAAGAATATAACTTCTTCTAACAAGAAAACTCAGCCTAGTGGAAGTTCTGATTCAGATTCTGATAGCAGCTCTGACGAGGATGATAAAAAGAAAATATCTGCAACTACAAAGCTGCCTGCGTCATCAGTTGCTCCAGTTAAGAAAGTGGAAAGCTCAGATGATGATTCGAGTGAAGACTCTGATGAAGACGATGATGTCAAGCCCTCTGCAACTGCTGTGTCAAAGCCTGCTGTGTCAAAGAAGAAAGTTGATAGTTCTGATTCTGATGATAGCAGCTCTGATGAAGACAATAAGAAGGCTGCCAAAAAGGTTTCCAATTCCAAGTCAGTGCCTGTGTCTAAGCAGCCTGTTAAGACCTCAAGTACTAGTGATTCTGATGAAGAGGATTCTTCTGAAAGTGACTCTGAAGAGGAAAAGAAAACTGCAAAACCTGCTAATCTTAGTAAGAAACCAGCGGCTGTAGTGAAGACCCCTAAAAAAGGTTCTACTGAAAGTTCATCAGAGAGTGATTCTTCAGATGACGAGGGGAAGAAGATGGATGTAGACGAGGAAGATAGTTCTGATGAAAGTGAAAAGCCACAGCAGAAGGCTGTGAAAAATGTGAAAGAAAGCAGTGACAGTTCAGATGATGATAGTGAGGAAGAAAGTGAGGACGAACCCTCCAAAACACCTCAAAAAAGAGCTAGGGACGTGGAGATGGTAGATGCTGTTTCATCCGGAAAGAAAACTCCCAATACTCCAATTACACCAAATGCAGAAAGTGGTGCTTCAAATACTGTTTTTGTAGGGAATCTGGCGTACAGTGTTACCCGAGCTGATGTGGAAAATTTCTTCAAGGATTGTGGAGAAGTTGTGGAAGTTCGTCTTGCTTCGAATGACGAAGGATTGTTTAAAGGATTTGGACATGTTGAGTTCGCAACAGTTGAAGCTGCCCAGAAAGGTCTTGAGTTGAATGGAGAAGAGTTATTGAATCGTCCAGTGCGGCTGGATATAGCCAAGTCCAAGGACAGGGGTGCTTATACTCCCAATAGCAGCAATTGGAAAGACTCATCTCAGAGAAGTGGAAGAGGCCAGTCTCATACCCTTTACGTAAGGGGTTTTGATAAAACAATTGGGGAAGATGAGATAAGAGCTAGTTTGGAAGAACATTTTGGTTCTTGTGGAGAAATTACAAGGGTTTCAATTCCGAAAGATTACGAGACTGGTGCTGTCAAGGGGTTTGCTTACCTGGACTTTGGTGATTCTGATAGCATAAGCAAAGCTCTAGAACTCCATGAAACTGAACTTGGTGGTTATACCCTCACAGTTGATGAAGCCAAGCCTAAGGATAATCAAGCCTCTGGGGGAAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGGTTTGGTGGAAGAGGTGGCAGTGGAGGTAGATTTGGAGGCAGTGGTGGAGGTAGATTTGGAGGCAGTGGTGGTGGCCGATTTGGTGGAAGTGGAAGAGGTGGTGGTGGTGGTAGATTTGGTGGAAGAGGCGGTGGTGGAAGAGGTCGTGGACCTCCAAATAGATCCATGGCGGAAGGCACAGGGAAAAAGACCAAGTTTGCCGATGAAGACTAG 2244 0.4496 MGKSSKKSAVKVDAAPAVVPSSKSAKKGGKRQAEEESEKQVIAKKQKIEEVAQKQKKEAKLQKKKESSSDDSSSDSEDEKPAVKPAALSKKIPTKNGAVKAPAKKGKPVSSSSESSEDDSSESEDEKPVPKAAVPSKKAPAKNGVPAKKGKPASSSSSSEDSEDDSSEDEKPAAKNGSVTASAKNVKPAAAASSSDLSEDSSDEDDVPKTKVVPAAAKNITSSNKKTQPSGSSDSDSDSSSDEDDKKKISATTKLPASSVAPVKKVESSDDDSSEDSDEDDDVKPSATAVSKPAVSKKKVDSSDSDDSSSDEDNKKAAKKVSNSKSVPVSKQPVKTSSTSDSDEEDSSESDSEEEKKTAKPANLSKKPAAVVKTPKKGSTESSSESDSSDDEGKKMDVDEEDSSDESEKPQQKAVKNVKESSDSSDDDSEEESEDEPSKTPQKRARDVEMVDAVSSGKKTPNTPITPNAESGASNTVFVGNLAYSVTRADVENFFKDCGEVVEVRLASNDEGLFKGFGHVEFATVEAAQKGLELNGEELLNRPVRLDIAKSKDRGAYTPNSSNWKDSSQRSGRGQSHTLYVRGFDKTIGEDEIRASLEEHFGSCGEITRVSIPKDYETGAVKGFAYLDFGDSDSISKALELHETELGGYTLTVDEAKPKDNQASGGRGGGGRGGGGRFGGRGGSGGRFGGSGGGRFGGSGGGRFGGSGRGGGGGRFGGRGGGGRGRGPPNRSMAEGTGKKTKFADED* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0299 747 MobiDBLite consensus disorder prediction 555 576 - -
Vra2g0299 747 MobiDBLite consensus disorder prediction 456 473 - -
Vra2g0299 747 MobiDBLite consensus disorder prediction 321 337 - -
Vra2g0299 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 477 544 IPR000504 GO:0003723
Vra2g0299 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 579 651 IPR000504 GO:0003723
Vra2g0299 747 MobiDBLite consensus disorder prediction 27 85 - -
Vra2g0299 747 Coils Coil 34 65 - -
Vra2g0299 747 Gene3D - 562 695 IPR012677 -
Vra2g0299 747 CDD RRM1_NUCLs 476 552 IPR034349 -
Vra2g0299 747 MobiDBLite consensus disorder prediction 654 747 - -
Vra2g0299 747 MobiDBLite consensus disorder prediction 406 423 - -
Vra2g0299 747 MobiDBLite consensus disorder prediction 178 197 - -
Vra2g0299 747 Gene3D - 394 561 IPR012677 -
Vra2g0299 747 SUPERFAMILY RNA-binding domain, RBD 464 574 IPR035979 GO:0003676
Vra2g0299 747 MobiDBLite consensus disorder prediction 1 473 - -
Vra2g0299 747 SMART rrm1_1 578 654 IPR000504 GO:0003723
Vra2g0299 747 SMART rrm1_1 476 547 IPR000504 GO:0003723
Vra2g0299 747 SUPERFAMILY RNA-binding domain, RBD 571 689 IPR035979 GO:0003676
Vra2g0299 747 MobiDBLite consensus disorder prediction 436 453 - -
Vra2g0299 747 MobiDBLite consensus disorder prediction 216 236 - -
Vra2g0299 747 PANTHER BNAA08G02930D PROTEIN 431 680 - -
Vra2g0299 747 MobiDBLite consensus disorder prediction 297 320 - -
Vra2g0299 747 MobiDBLite consensus disorder prediction 551 576 - -
Vra2g0299 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 475 551 IPR000504 GO:0003723
Vra2g0299 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 577 658 IPR000504 GO:0003723
Vra2g0299 747 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 431 680 - -
Vra2g0299 747 CDD RRM2_NUCLs 578 656 IPR034350 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0299 Vra-Chr2 2250486 2256180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0299 467 659 Eukaryotic Initiation Factors Gene Family AT2G36660 27.551 6.95e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0299 K11294 - gmx:100779929 507.294